SHOGoiN Cell Methylome: GSM1900062-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900062-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M12Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000072844 G530011O06Rik RIKEN cDNA G530011O06 gene 6.7944 0.0000
2 ENSMUSG00000111749 Gm47927 predicted gene, 47927 6.6724 0.0000
3 ENSMUSG00000109754 Gm39214 predicted gene, 39214 6.6439 0.0000
4 ENSMUSG00000031933 Izumo1r IZUMO1 receptor, JUNO 6.5392 0.0000
5 ENSMUSG00000041477 Dcp1b mRNA-decapping enzyme 1B 6.5236 0.0000
6 ENSMUSG00000108739 Gm45096 predicted gene 45096 6.5157 0.0000
7 ENSMUSG00000082255 Gm11822 predicted gene 11822 6.3399 0.0000
8 ENSMUSG00000085401 Slc39a1-ps solute carrier family 39 (zinc transporter), member 1, pseudogene 6.3219 0.0000
9 ENSMUSG00000103353 Gm37597 predicted gene, 37597 6.3219 0.0000
10 ENSMUSG00000107307 Gm42935 predicted gene 42935 6.2988 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000069712 4930444G20Rik RIKEN cDNA 4930444G20 gene -5.9623 0.0000
50997 ENSMUSG00000024258 Polr2d DNA-directed RNA polymerase II subunit RPB4 -5.9570 0.0000
50996 ENSMUSG00000081948 Olfr1191-ps1 NA -5.9542 0.0000
50995 ENSMUSG00000056203 Tas2r135 taste receptor, type 2, member 135 -5.9542 0.0000
50994 ENSMUSG00000050953 Gja1 gap junction protein, alpha 1 -5.9542 0.0000
50993 ENSMUSG00000030089 Slc41a3 solute carrier family 41, member 3 -5.9542 0.0000
50992 ENSMUSG00000038212 Mfsd14b Hippocampus abundant transcript-like protein 1 -5.9495 0.0000
50991 ENSMUSG00000027679 Dnajc19 Mitochondrial import inner membrane translocase subunit TIM14 -5.9474 0.0000
50990 ENSMUSG00000045328 Cenpe centromere protein E -5.9437 0.0000
50989 ENSMUSG00000105238 Gm44357 predicted gene, 44357 -5.9411 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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