SHOGoiN Cell Methylome: GSM1900062-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900062-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M12Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS), Trio-seqHiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000072844 G530011O06Rik RIKEN cDNA G530011O06 gene 6.7944 0.0000
2 ENSMUSG00000111749 NA 6.6724 0.0000
3 ENSMUSG00000109754 Gm39214 predicted gene, 39214 6.6439 0.0000
4 ENSMUSG00000031933 Izumo1r IZUMO1 receptor, JUNO 6.5392 0.0000
5 ENSMUSG00000041477 Dcp1b decapping mRNA 1B 6.5236 0.0000
6 ENSMUSG00000108739 Gm45096 predicted gene 45096 6.5157 0.0000
7 ENSMUSG00000082255 Gm11822 predicted gene 11822 6.3399 0.0000
8 ENSMUSG00000085401 Slc39a1-ps solute carrier family 39 (zinc transporter), member 1, pseudogene 6.3219 0.0000
9 ENSMUSG00000103353 Gm37597 predicted gene, 37597 6.3219 0.0000
10 ENSMUSG00000107307 Gm42935 predicted gene 42935 6.2988 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000004540 Psg17 pregnancy specific glycoprotein 17 -6.1085 0.0000
51075 ENSMUSG00000029054 Gabrd gamma-aminobutyric acid (GABA) A receptor, subunit delta -6.1079 0.0000
51074 ENSMUSG00000092123 Gm17581 predicted gene, 17581 -6.1060 0.0000
51073 ENSMUSG00000080916 Gm12463 predicted gene 12463 -6.0980 0.0000
51072 ENSMUSG00000106249 Gm43349 predicted gene 43349 -6.0875 0.0000
51071 ENSMUSG00000008136 Fhl2 four and a half LIM domains 2 -6.0875 0.0000
51070 ENSMUSG00000097772 5430416N02Rik RIKEN cDNA 5430416N02 gene -6.0851 0.0000
51069 ENSMUSG00000028480 Glipr2 GLI pathogenesis-related 2 -6.0839 0.0000
51068 ENSMUSG00000031314 Taf1 TATA-box binding protein associated factor 1 -6.0834 0.0000
51067 ENSMUSG00000108371 Gm38832 predicted gene, 38832 -6.0661 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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