SHOGoiN Cell Methylome: GSM1900063-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900063-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M13Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000027880 Slc25a54 solute carrier family 25, member 54 7.1497 0.0000
2 ENSMUSG00000105638 4930408K08Rik RIKEN cDNA 4930408K08 gene 7.1497 0.0000
3 ENSMUSG00000064429 Gm22747 predicted gene, 22747 6.7549 0.0000
4 ENSMUSG00000089210 Gm23386 predicted gene, 23386 6.7548 0.0000
5 ENSMUSG00000108941 D530014G21Rik RIKEN cDNA D530014G21 gene 6.7415 0.0000
6 ENSMUSG00000109127 Gm31135 predicted gene, 31135 6.7415 0.0000
7 ENSMUSG00000108740 Gm6008 predicted gene 6008 6.7279 0.0000
8 ENSMUSG00000083771 Gm15988 predicted gene 15988 6.7088 0.0000
9 ENSMUSG00000054412 Gm4793 predicted gene 4793 6.6947 0.0000
10 ENSMUSG00000089508 Gm23473 predicted gene, 23473 6.6865 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000078670 Fam174b family with sequence similarity 174, member B -6.3687 0.0000
51075 ENSMUSG00000106106 NA -6.3634 0.0000
51074 ENSMUSG00000041268 Dmxl2 Dmx-like 2 -6.3500 0.0000
51073 ENSMUSG00000073616 Cops9 COP9 signalosome subunit 9 -6.3484 0.0000
51072 ENSMUSG00000044055 Otos otospiralin -6.3484 0.0000
51071 ENSMUSG00000108418 Gm44627 predicted gene 44627 -6.3467 0.0000
51070 ENSMUSG00000026088 Mitd1 MIT, microtubule interacting and transport, domain containing 1 -6.3436 0.0000
51069 ENSMUSG00000087151 Gm14022 predicted gene 14022 -6.3399 0.0000
51068 ENSMUSG00000020253 Ppm1m protein phosphatase 1M -6.3399 0.0000
51067 ENSMUSG00000098022 Zfp82 zinc finger protein 82 -6.3325 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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