SHOGoiN Cell Methylome: GSM1900063-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900063-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M13Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000027880 Slc25a54 solute carrier family 25, member 54 7.1497 0.0000
2 ENSMUSG00000105638 4930408K08Rik RIKEN cDNA 4930408K08 gene 7.1497 0.0000
3 ENSMUSG00000064429 Gm22747 predicted gene, 22747 6.7549 0.0000
4 ENSMUSG00000089210 Gm23386 predicted gene, 23386 6.7548 0.0000
5 ENSMUSG00000108941 D530014G21Rik RIKEN cDNA D530014G21 gene 6.7415 0.0000
6 ENSMUSG00000109127 Gm31135 predicted gene, 31135 6.7415 0.0000
7 ENSMUSG00000108740 Gm6008 predicted gene 6008 6.7279 0.0000
8 ENSMUSG00000083771 Gm15988 predicted gene 15988 6.7088 0.0000
9 ENSMUSG00000054412 Gm4793 NA 6.6947 0.0000
10 ENSMUSG00000089508 Gm23473 predicted gene, 23473 6.6865 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000097932 C430039J16Rik RIKEN cDNA C430039J16 gene -6.1996 0.0000
50997 ENSMUSG00000111258 Gm34397 predicted gene, 34397 -6.1987 0.0000
50996 ENSMUSG00000029505 Ep400 E1A-binding protein p400 -6.1949 0.0000
50995 ENSMUSG00000070305 Mpzl3 Myelin protein zero-like protein 3 -6.1947 0.0000
50994 ENSMUSG00000035095 Fam167a Protein FAM167A -6.1912 0.0000
50993 ENSMUSG00000089491 Gm26363 predicted gene, 26363 -6.1898 0.0000
50992 ENSMUSG00000078648 Gm17546 NA -6.1898 0.0000
50991 ENSMUSG00000066489 Rpl26-ps2 ribosomal protein L26, pseudogene 2 -6.1898 0.0000
50990 ENSMUSG00000052396 Mogat2 2-acylglycerol O-acyltransferase 2 -6.1898 0.0000
50989 ENSMUSG00000107990 Gm7890 predicted gene 7890 -6.1884 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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