SHOGoiN Cell Methylome: GSM1900063-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900063-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M14Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000111587 NA 7.1396 0.0000
2 ENSMUSG00000080524 Gm23879 predicted gene, 23879 6.8662 0.0000
3 ENSMUSG00000086771 1700080G11Rik RIKEN cDNA 1700080G11 gene 6.8629 0.0000
4 ENSMUSG00000094497 Gm8210 predicted pseudogene 8210 6.8418 0.0000
5 ENSMUSG00000026288 Inpp5d inositol polyphosphate-5-phosphatase D 6.7944 0.0000
6 ENSMUSG00000046108 Il17c interleukin 17C 6.7814 0.0000
7 ENSMUSG00000064429 Gm22747 predicted gene, 22747 6.7549 0.0000
8 ENSMUSG00000089105 Gm23115 predicted gene, 23115 6.7549 0.0000
9 ENSMUSG00000109079 Gm44755 predicted gene 44755 6.7515 0.0000
10 ENSMUSG00000088966 Gm22088 predicted gene, 22088 6.7279 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000094411 Snord16a small nucleolar RNA, C/D box 16A -6.3923 0.0000
51075 ENSMUSG00000065752 Gm23344 predicted gene, 23344 -6.3923 0.0000
51074 ENSMUSG00000064918 Gm22571 predicted gene, 22571 -6.3923 0.0000
51073 ENSMUSG00000064514 Gm22455 predicted gene, 22455 -6.3923 0.0000
51072 ENSMUSG00000032399 Rpl4 ribosomal protein L4 -6.3923 0.0000
51071 ENSMUSG00000032398 Snapc5 small nuclear RNA activating complex, polypeptide 5 -6.3923 0.0000
51070 ENSMUSG00000050953 Gja1 gap junction protein, alpha 1 -6.3923 0.0000
51069 ENSMUSG00000076361 Mir182 microRNA 182 -6.3894 0.0000
51068 ENSMUSG00000107062 Gm43580 predicted gene 43580 -6.3874 0.0000
51067 ENSMUSG00000081339 Gm16044 predicted gene 16044 -6.3874 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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