SHOGoiN Cell Methylome: GSM1900063-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900063-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M14Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000111587 NA 7.1396 0.0000
2 ENSMUSG00000080524 Gm23879 predicted gene, 23879 6.8662 0.0000
3 ENSMUSG00000086771 1700080G11Rik RIKEN cDNA 1700080G11 gene 6.8629 0.0000
4 ENSMUSG00000094497 Gm8210 predicted pseudogene 8210 6.8418 0.0000
5 ENSMUSG00000026288 Inpp5d Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 6.7944 0.0000
6 ENSMUSG00000046108 Il17c interleukin-17C 6.7814 0.0000
7 ENSMUSG00000064429 Gm22747 predicted gene, 22747 6.7549 0.0000
8 ENSMUSG00000089105 Gm23115 predicted gene, 23115 6.7549 0.0000
9 ENSMUSG00000109079 Gm44755 predicted gene 44755 6.7515 0.0000
10 ENSMUSG00000088966 Gm22088 predicted gene, 22088 6.7279 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000034593 Myo5a Unconventional myosin-Va -6.2432 0.0000
50997 ENSMUSG00000046311 Zfp62 zinc finger protein 62 -6.2421 0.0000
50996 ENSMUSG00000058586 Serhl Serine hydrolase-like protein -6.2416 0.0000
50995 ENSMUSG00000031778 Cx3cl1 chemokine (C-X3-C motif) ligand 1 -6.2402 0.0000
50994 ENSMUSG00000090964 Gm17206 predicted gene 17206 -6.2328 0.0000
50993 ENSMUSG00000095072 Gm24509 predicted gene, 24509 -6.2288 0.0000
50992 ENSMUSG00000014599 Csf1 Macrophage colony-stimulating factor 1 Processed macrophage colony-stimulating factor 1 -6.2288 0.0000
50991 ENSMUSG00000025582 Nptx1 neuronal pentraxin 1 -6.2225 0.0000
50990 ENSMUSG00000092349 Platr17 pluripotency associated transcript 17 -6.2223 0.0000
50989 ENSMUSG00000073616 Cops9 COP9 signalosome complex subunit 9 -6.2214 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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