SHOGoiN Cell Methylome: GSM1900064-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900064-1


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M15Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000021218 Gdi2 Rab GDP dissociation inhibitor beta 6.8455 0.0000
2 ENSMUSG00000052861 Dnah6 dynein axonemal heavy chain 6 6.7679 0.0000
3 ENSMUSG00000065072 Gm24533 predicted gene, 24533 6.7679 0.0000
4 ENSMUSG00000086601 Rapgef3os1 Rap guanine nucleotide exchange factor (GEF) 3, opposite strand 1 6.6759 0.0000
5 ENSMUSG00000085562 2610028E06Rik RIKEN cDNA 2610028E06 gene 6.6534 0.0000
6 ENSMUSG00000080057 Gm12378 predicted gene 12378 6.6294 0.0000
7 ENSMUSG00000027953 Slc50a1 Sugar transporter SWEET1 6.6245 0.0000
8 ENSMUSG00000081168 Gm13730 predicted gene 13730 6.5850 0.0000
9 ENSMUSG00000097505 Gm26540 predicted gene, 26540 6.5850 0.0000
10 ENSMUSG00000035232 Pdk3 pyruvate dehydrogenase kinase, isoenzyme 3 6.5392 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000064416 Gm22248 predicted gene, 22248 -6.2854 0.0000
50997 ENSMUSG00000053656 Dancr NA -6.2854 0.0000
50996 ENSMUSG00000095379 Gm22108 predicted gene, 22108 -6.2823 0.0000
50995 ENSMUSG00000026750 Psmb7 Proteasome subunit beta type-7 -6.2817 0.0000
50994 ENSMUSG00000108418 Gm44627 predicted gene 44627 -6.2796 0.0000
50993 ENSMUSG00000000320 Alox12 arachidonate 12-lipoxygenase -6.2792 0.0000
50992 ENSMUSG00000106106 NA -6.2752 0.0000
50991 ENSMUSG00000026749 Nek6 Serine/threonine-protein kinase Nek6 -6.2745 0.0000
50990 ENSMUSG00000037490 Slc2a12 solute carrier family 2 (facilitated glucose transporter), member 12 -6.2727 0.0000
50989 ENSMUSG00000102741 Gm2979 predicted gene 2979 -6.2699 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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