SHOGoiN Cell Methylome: GSM1900064-1

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900064-1


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9060100-715Sequence Read ArchiveSRP052901SRP052901_M15Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000021218 Gdi2 guanosine diphosphate (GDP) dissociation inhibitor 2 6.8455 0.0000
2 ENSMUSG00000052861 Dnah6 dynein, axonemal, heavy chain 6 6.7679 0.0000
3 ENSMUSG00000065072 Gm24533 predicted gene, 24533 6.7679 0.0000
4 ENSMUSG00000086601 Rapgef3os1 Rap guanine nucleotide exchange factor (GEF) 3, opposite strand 1 6.6759 0.0000
5 ENSMUSG00000085562 2610028E06Rik RIKEN cDNA 2610028E06 gene 6.6534 0.0000
6 ENSMUSG00000080057 Gm12378 predicted gene 12378 6.6294 0.0000
7 ENSMUSG00000027953 Slc50a1 solute carrier family 50 (sugar transporter), member 1 6.6245 0.0000
8 ENSMUSG00000081168 Gm13730 predicted gene 13730 6.5850 0.0000
9 ENSMUSG00000097505 Gm26540 predicted gene, 26540 6.5850 0.0000
10 ENSMUSG00000035232 Pdk3 pyruvate dehydrogenase kinase, isoenzyme 3 6.5392 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000107076 Gm43480 predicted gene 43480 -6.4251 0.0000
51075 ENSMUSG00000051984 Sec31b Sec31 homolog B (S. cerevisiae) -6.4187 0.0000
51074 ENSMUSG00000042873 Lhfpl4 lipoma HMGIC fusion partner-like protein 4 -6.4174 0.0000
51073 ENSMUSG00000105349 Gm43604 predicted gene 43604 -6.4094 0.0000
51072 ENSMUSG00000027479 Mapre1 microtubule-associated protein, RP/EB family, member 1 -6.4094 0.0000
51071 ENSMUSG00000009563 Tor2a torsin family 2, member A -6.4094 0.0000
51070 ENSMUSG00000094694 Ighv1-9 immunoglobulin heavy variable V1-9 -6.4051 0.0000
51069 ENSMUSG00000105840 Gm6073 predicted gene 6073 -6.3951 0.0000
51068 ENSMUSG00000078795 Ceacam15 carcinoembryonic antigen-related cell adhesion molecule 15 -6.3923 0.0000
51067 ENSMUSG00000078599 Skint8 selection and upkeep of intraepithelial T cells 8 -6.3923 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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