SHOGoiN Cell Methylome: GSM1900064-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900064-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M16Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSMUSG00000103685 Gm37074 predicted gene, 37074 7.0334 0.0000
3 ENSMUSG00000090657 Gm8114 predicted gene 8114 6.9307 0.0000
4 ENSMUSG00000021460 Auh AU RNA binding protein/enoyl-coenzyme A hydratase 6.7459 0.0000
5 ENSMUSG00000107907 Gm8574 predicted gene 8574 6.6629 0.0000
6 ENSMUSG00000064522 Gm26442 predicted gene, 26442 6.6534 0.0000
7 ENSMUSG00000104189 Gm37822 predicted gene, 37822 6.6534 0.0000
8 ENSMUSG00000041477 Dcp1b decapping mRNA 1B 6.6510 0.0000
9 ENSMUSG00000059159 Gm8129 predicted pseudogene 8129 6.6439 0.0000
10 ENSMUSG00000111704 NA 6.6294 0.0000
51067 ENSMUSG00000003779 Kif20a kinesin family member 20A -6.4050 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
51076 ENSMUSG00000001964 Emd emerin -6.4172 0.0000
51075 ENSMUSG00000098178 Gm42418 predicted gene, 42418 -6.4163 0.0000
51074 ENSMUSG00000045867 Cradd CASP2 and RIPK1 domain containing adaptor with death domain -6.4160 0.0000
51073 ENSMUSG00000074913 Gm815 predicted gene 815 -6.4159 0.0000
51072 ENSMUSG00000040466 Blvrb biliverdin reductase B (flavin reductase (NADPH)) -6.4116 0.0000
51071 ENSMUSG00000061207 Stk19 serine/threonine kinase 19 -6.4094 0.0000
51070 ENSMUSG00000022120 Rnf219 ring finger protein 219 -6.4094 0.0000
51069 ENSMUSG00000015354 Pcolce2 procollagen C-endopeptidase enhancer 2 -6.4094 0.0000
51068 ENSMUSG00000003423 Pih1d1 PIH1 domain containing 1 -6.4094 0.0000
51067 ENSMUSG00000003779 Kif20a kinesin family member 20A -6.4050 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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