SHOGoiN Cell Methylome: GSM1900064-2

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1900064-2


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7020001000000000000000-715Sequence Read ArchiveSRP052901SRP052901_M16Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinomaMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSMUSG00000103685 Gm37074 predicted gene, 37074 7.0334 0.0000
3 ENSMUSG00000090657 Gm8114 predicted gene 8114 6.9307 0.0000
4 ENSMUSG00000021460 Auh AU RNA binding methylglutaconyl-CoA hydratase 6.7459 0.0000
5 ENSMUSG00000107907 Gm8574 predicted gene 8574 6.6629 0.0000
6 ENSMUSG00000064522 Gm26442 predicted gene, 26442 6.6534 0.0000
7 ENSMUSG00000104189 Gm37822 predicted gene, 37822 6.6534 0.0000
8 ENSMUSG00000041477 Dcp1b mRNA-decapping enzyme 1B 6.6510 0.0000
9 ENSMUSG00000059159 Gm8129 predicted pseudogene 8129 6.6439 0.0000
10 ENSMUSG00000111704 Gm47379 predicted gene, 47379 6.6294 0.0000
50989 ENSMUSG00000108016 Gm8039 predicted gene 8039 -6.3038 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000104600 Dmrt1i NA -6.3189 0.0000
50997 ENSMUSG00000103213 Gm38289 predicted gene, 38289 -6.3183 0.0000
50996 ENSMUSG00000094942 Gm3604 NA -6.3179 0.0000
50995 ENSMUSG00000091076 Vmn2r115 vomeronasal 2, receptor 115 -6.3174 0.0000
50994 ENSMUSG00000087293 Gm14341 predicted gene 14341 -6.3169 0.0000
50993 ENSMUSG00000027574 Nkain4 Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 4 -6.3169 0.0000
50992 ENSMUSG00000065301 Gm23248 predicted gene, 23248 -6.3160 0.0000
50991 ENSMUSG00000108959 Gm44697 predicted gene 44697 -6.3038 0.0000
50990 ENSMUSG00000108135 Gm8035 predicted gene 8035 -6.3038 0.0000
50989 ENSMUSG00000108016 Gm8039 predicted gene 8039 -6.3038 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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