SHOGoiN Cell Methylome: GSM2026495

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026495


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M3Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109193 Gm39027 predicted gene, 39027 6.7072 0.0000
2 ENSMUSG00000084757 1700057H15Rik RIKEN cDNA 1700057H15 gene 6.6294 0.0000
3 ENSMUSG00000089105 Gm23115 predicted gene, 23115 6.6147 0.0000
4 ENSMUSG00000085284 Gm16189 predicted gene 16189 6.5236 0.0000
5 ENSMUSG00000036185 Sapcd1 Suppressor APC domain-containing protein 1 6.4757 0.0000
6 ENSMUSG00000081465 Gm12884 predicted gene 12884 6.4757 0.0000
7 ENSMUSG00000083901 Gm12885 predicted gene 12885 6.4757 0.0000
8 ENSMUSG00000083941 Gm12889 predicted gene 12889 6.4757 0.0000
9 ENSMUSG00000040540 Gm9770 predicted gene 9770 6.4739 0.0000
10 ENSMUSG00000100310 Gm19641 predicted gene, 19641 6.4178 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000038290 Smg6 Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) -5.2643 0.0000
50997 ENSMUSG00000011171 Vipr2 vasoactive intestinal peptide receptor 2 -5.2629 0.0000
50996 ENSMUSG00000001376 Vps50 VPS50 EARP/GARPII complex subunit -5.2591 0.0000
50995 ENSMUSG00000097445 Gm26631 predicted gene, 26631 -5.2579 0.0000
50994 ENSMUSG00000032305 Fam219b Protein FAM219B -5.2579 0.0000
50993 ENSMUSG00000108472 Gm45212 predicted gene 45212 -5.2529 0.0000
50992 ENSMUSG00000023026 Dip2b Disco-interacting B -5.2479 0.0000
50991 ENSMUSG00000088719 Gm22733 predicted gene, 22733 -5.2471 0.0000
50990 ENSMUSG00000064702 Gm24950 predicted gene, 24950 -5.2457 0.0000
50989 ENSMUSG00000047197 Gjd3 gap junction protein, delta 3 -5.2395 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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