SHOGoiN Cell Methylome: GSM2026497

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026497


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M5Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000043583 4930470P17Rik RIKEN cDNA 4930470P17 gene 8.1898 0.0000
2 ENSMUSG00000081026 Gm11855 predicted gene 11855 8.1370 0.0000
3 ENSMUSG00000094515 Gm24567 predicted gene, 24567 8.1370 0.0000
4 ENSMUSG00000093100 Mir3971 microRNA 3971 7.8138 0.0000
5 ENSMUSG00000065656 Gm23104 predicted gene, 23104 7.8009 0.0000
6 ENSMUSG00000000730 Dnmt3l DNA (cytosine-5)-methyltransferase 3-like 7.7814 0.0000
7 ENSMUSG00000070280 Slc22a14 solute carrier family 22 (organic cation transporter), member 14 7.7145 0.0000
8 ENSMUSG00000082924 Gm11462 predicted gene 11462 7.7091 0.0000
9 ENSMUSG00000098097 6530403H02Rik RIKEN cDNA 6530403H02 gene 7.7074 0.0000
10 ENSMUSG00000042349 Ikbke Inhibitor of nuclear factor kappa-B kinase subunit epsilon 7.6935 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000028612 Lrp8os1 NA -6.9550 0.0000
50997 ENSMUSG00000017057 Il13ra1 Interleukin-13 receptor subunit alpha-1 -6.9491 0.0000
50996 ENSMUSG00000021615 Xrcc4 X-ray repair complementing defective repair in Chinese hamster cells 4 -6.9483 0.0000
50995 ENSMUSG00000025374 Nabp2 SOSS complex subunit B1 -6.9454 0.0000
50994 ENSMUSG00000042810 Krba1 Mus musculus KRAB-A domain containing 1 (Krba1), transcript variant 1, mRNA. -6.9422 0.0000
50993 ENSMUSG00000020393 Kremen1 Kremen protein 1 -6.9416 0.0000
50992 ENSMUSG00000106551 Gm1969 predicted gene 1969 -6.9307 0.0000
50991 ENSMUSG00000039634 Zfp189 zinc finger protein 189 -6.9251 0.0000
50990 ENSMUSG00000063849 Ppcdc phosphopantothenoylcysteine decarboxylase -6.9250 0.0000
50989 ENSMUSG00000081187 3110067C02Rik RIKEN cDNA 3110067C02 gene -6.9247 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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