SHOGoiN Cell Methylome: GSM2026499

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026499


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M7Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105147 Ckb-ps1 creatine kinase, brain, pseudogene 1 8.6958 0.0000
2 ENSMUSG00000105473 Mark1-ps1 MAP/microtubule affinity regulating kinase 1, pseudogene 1 8.6958 0.0000
3 ENSMUSG00000077578 Gm25631 predicted gene, 25631 8.5527 0.0000
4 ENSMUSG00000081565 Rps12-ps5 ribosomal protein S12, pseudogene 5 8.2844 0.0000
5 ENSMUSG00000080441 Mir1249 microRNA 1249 8.0768 0.0000
6 ENSMUSG00000104037 Gm37776 predicted gene, 37776 7.9009 0.0000
7 ENSMUSG00000091955 Gm9844 predicted pseudogene 9844 7.8611 0.0000
8 ENSMUSG00000108302 Gm18207 predicted gene, 18207 7.8611 0.0000
9 ENSMUSG00000023387 Kcnk16 NA 7.7458 0.0000
10 ENSMUSG00000084918 Gm12708 predicted gene 12708 7.7347 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000002733 Plekha3 Pleckstrin homology domain-containing family A member 3 -7.0484 0.0000
50997 ENSMUSG00000084968 Gm12743 predicted gene 12743 -7.0417 0.0000
50996 ENSMUSG00000021745 Ptprg receptor-type tyrosine-protein phosphatase gamma isoform 2 -7.0413 0.0000
50995 ENSMUSG00000038612 Mcl1 Induced myeloid leukemia cell differentiation -7.0306 0.0000
50994 ENSMUSG00000094843 Ppp1r2-ps1 protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 1 -7.0250 0.0000
50993 ENSMUSG00000020170 Frs2 Fibroblast growth factor receptor substrate 2 -7.0239 0.0000
50992 ENSMUSG00000095379 Gm22108 predicted gene, 22108 -7.0224 0.0006
50991 ENSMUSG00000053593 Fate1 Fetal and adult testis-expressed transcript protein homolog -7.0224 0.0000
50990 ENSMUSG00000034265 Zdhhc14 zinc finger, DHHC domain containing 14 -7.0200 0.0000
50989 ENSMUSG00000108663 Gm33080 predicted gene, 33080 -7.0158 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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