SHOGoiN Cell Methylome: GSM2026501

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026501


Profile download
3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M9Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000051900 Abca16 ATP-binding cassette, sub-family A (ABC1), member 16 8.1384 0.0000
2 ENSMUSG00000081465 Gm12884 predicted gene 12884 8.0553 0.0000
3 ENSMUSG00000083901 Gm12885 predicted gene 12885 8.0553 0.0000
4 ENSMUSG00000083941 Gm12889 predicted gene 12889 8.0553 0.0000
5 ENSMUSG00000096704 Gm24805 predicted gene, 24805 7.7074 0.0000
6 ENSMUSG00000065532 Mir187 microRNA 187 7.3309 0.0000
7 ENSMUSG00000106994 Gm10829 predicted gene 10829 7.3219 0.0000
8 ENSMUSG00000068680 Gm10248 NA 7.3038 0.0000
9 ENSMUSG00000098248 Gm27222 predicted gene 27222 7.2668 0.0000
10 ENSMUSG00000027107 Chrna1 cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) 7.1312 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000033705 Stard9 StAR-related lipid transfer protein 9 -5.2479 0.0002
50997 ENSMUSG00000102959 Gm37015 predicted gene, 37015 -5.2374 0.0000
50996 ENSMUSG00000097662 Gm2093 predicted gene 2093 -5.2298 0.0000
50995 ENSMUSG00000036820 Amdhd2 N-acetylglucosamine-6-phosphate deacetylase -5.2184 0.0000
50994 ENSMUSG00000032336 Nptn Neuroplastin -5.2162 0.0000
50993 ENSMUSG00000074256 Gm10655 NA -5.2051 0.0000
50992 ENSMUSG00000020546 Stxbp4 Syntaxin-binding protein 4 -5.1969 0.0000
50991 ENSMUSG00000021936 Mapk8 Mitogen-activated protein kinase 8 -5.1964 0.0000
50990 ENSMUSG00000041935 AW549877 UPF0600 -5.1876 0.0000
50989 ENSMUSG00000098042 Gm5710 predicted gene 5710 -5.1699 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...