SHOGoiN Cell Methylome: GSM2026504

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026504


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M12Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105775 Gm10290 predicted pseudogene 10290 8.0168 0.0000
2 ENSMUSG00000088478 Mir1946b microRNA 1946b 7.8887 0.0000
3 ENSMUSG00000090381 Gm6158 predicted gene 6158 7.7549 0.0000
4 ENSMUSG00000025497 Cdhr5 Cadherin-related family member 5 7.5430 0.0000
5 ENSMUSG00000037820 Tgm2 Protein-glutamine gamma-glutamyltransferase 2 7.4696 0.0000
6 ENSMUSG00000108149 Olfr439-ps1 olfactory receptor 439, pseudogene 1 7.4512 0.0000
7 ENSMUSG00000021298 Gpr132 G protein-coupled receptor 132 7.4335 0.0000
8 ENSMUSG00000039934 Gsap Gamma-secretase-activating protein Gamma-secretase-activating protein 16 kDa C-terminal form 7.4094 0.0000
9 ENSMUSG00000107450 Gm2522 predicted gene 2522 7.4094 0.0000
10 ENSMUSG00000102998 Gm37763 predicted gene, 37763 7.3750 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000061859 Patj Mus musculus PATJ, crumbs cell polarity complex component (Patj), transcript variant 5, mRNA. -6.7279 0.0000
50997 ENSMUSG00000040859 Bsdc1 BSD domain-containing protein 1 -6.7241 0.0000
50996 ENSMUSG00000021708 Rasgrf2 ras-specific guanine nucleotide-releasing factor 2 -6.7218 0.0000
50995 ENSMUSG00000042810 Krba1 Mus musculus KRAB-A domain containing 1 (Krba1), transcript variant 1, mRNA. -6.7161 0.0000
50994 ENSMUSG00000086629 2810403D21Rik RIKEN cDNA 2810403D21 gene -6.7142 0.0000
50993 ENSMUSG00000019139 Isyna1 Inositol-3-phosphate synthase 1 -6.7142 0.0000
50992 ENSMUSG00000003573 Homer3 Homer protein homolog 3 -6.7092 0.0000
50991 ENSMUSG00000035960 Apex1 DNA-(apurinic or apyrimidinic site) lyase DNA-(apurinic or apyrimidinic site) lyase, mitochondrial -6.7004 0.0000
50990 ENSMUSG00000006289 Osgep O-sialoglycoprotein endopeptidase -6.7004 0.0000
50989 ENSMUSG00000075070 4932412D23Rik RIKEN cDNA 4932412D23 gene -6.6966 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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