SHOGoiN Cell Methylome: GSM2026507

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2026507


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3150201000000000000000-189Sequence Read ArchiveSRP068012SRP068012_M15Simultaneous profiling of transcriptome and DNA methylome from a single cellMethylomeNeuron (Dorsal root ganglion)MouseSpinal cordBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000081465 Gm12884 predicted gene 12884 6.7549 0.0000
2 ENSMUSG00000083901 Gm12885 predicted gene 12885 6.7549 0.0000
3 ENSMUSG00000083941 Gm12889 predicted gene 12889 6.7549 0.0000
4 ENSMUSG00000020609 Apob Apolipoprotein B-100 Apolipoprotein B-48 5.9069 0.0000
5 ENSMUSG00000020098 Pcbd1 Pterin-4-alpha-carbinolamine dehydratase 5.8826 0.0000
6 ENSMUSG00000093406 Rpl48-ps1 ribosomal protein L48, pseudogene 1 5.5850 0.0000
7 ENSMUSG00000082170 Gm8617 predicted gene 8617 5.5546 0.0000
8 ENSMUSG00000082281 Gm4886 predicted gene 4886 5.5546 0.0000
9 ENSMUSG00000100837 1700063D05Rik RIKEN cDNA 1700063D05 gene 5.4263 0.0000
10 ENSMUSG00000029414 Kntc1 Kinetochore-associated protein 1 5.2854 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50998 ENSMUSG00000033900 Map9 Mus musculus microtubule-associated protein 9 (Map9), transcript variant 2, mRNA. -4.5687 0.0000
50997 ENSMUSG00000052291 5330438D12Rik RIKEN cDNA 5330438D12 gene -4.5682 0.0000
50996 ENSMUSG00000020166 Cnot2 Mus musculus CCR4-NOT transcription complex, subunit 2 (Cnot2), transcript variant 6, mRNA. -4.5682 0.0000
50995 ENSMUSG00000056598 Drc3 Dynein regulatory complex subunit 3 -4.5582 0.0000
50994 ENSMUSG00000045598 Zfp553 zinc finger protein 553 -4.5350 0.0000
50993 ENSMUSG00000043398 Gpr135 G protein-coupled receptor 135 -4.5343 0.0000
50992 ENSMUSG00000093779 Gm20648 predicted gene 20648 -4.5328 0.0000
50991 ENSMUSG00000112857 Gm35041 predicted gene, 35041 -4.5236 0.0025
50990 ENSMUSG00000106347 Mir5615-1 microRNA 5615-1 -4.5236 0.0025
50989 ENSMUSG00000097907 Raxos1 retina and anterior neural fold homeobox, opposite strand 1 -4.5236 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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