SHOGoiN Cell Methylome: GSM2042047

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042047


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9210600-755Sequence Read ArchiveSRP062328SRP062328_M20Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232217 FTLP8 ferritin light chain pseudogene 8 4.8074 0.0000
2 ENSG00000201586 RNU6-593P RNA, U6 small nuclear 593, pseudogene 4.6439 0.0000
3 ENSG00000232293 PAICSP7 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7 4.6439 0.0000
4 ENSG00000212485 RNU6-1197P RNA, U6 small nuclear 1197, pseudogene 4.5236 0.0000
5 ENSG00000224228 NA 4.5236 0.0000
6 ENSG00000228914 OR1H1P olfactory receptor family 1 subfamily H member 1 pseudogene 4.5236 0.0000
7 ENSG00000240992 RPS23P4 ribosomal protein S23 pseudogene 4 4.4799 0.0000
8 ENSG00000203942 C10orf62 chromosome 10 open reading frame 62 4.4594 0.0000
9 ENSG00000214391 TUBAP2 tubulin alpha pseudogene 2 4.4594 0.0000
10 ENSG00000249967 NA 4.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000237058 NA -4.1363 0.0930
63818 ENSG00000204880 KRTAP4-8 keratin associated protein 4-8 -4.1287 0.1685
63817 ENSG00000240215 TRBV25OR9-2 T-cell receptor beta variable 25/OR9-2 (pseudogene) -4.0881 0.0000
63816 ENSG00000273313 RBAKDN RBAK downstream neighbor (non-protein coding) -4.0875 0.1678
63815 ENSG00000258867 LINC01146 long intergenic non-protein coding RNA 1146 -4.0875 0.6224
63814 ENSG00000257120 NA -4.0875 0.6224
63813 ENSG00000255339 NA -4.0875 0.0019
63812 ENSG00000244582 NA -4.0875 0.6224
63811 ENSG00000241490 NA -4.0875 0.1678
63810 ENSG00000236400 KRTAP21-4P keratin associated protein 21-4, pseudogene -4.0875 0.6224

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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