SHOGoiN Cell Methylome: GSM2042048

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042048


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M21Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213786 NHP2P2 NHP2 ribonucleoprotein pseudogene 2 3.9897 0.0000
2 ENSG00000179709 NLRP8 NLR family pyrin domain containing 8 3.8074 0.0000
3 ENSG00000243385 NA 3.8074 0.0000
4 ENSG00000115816 CEBPZ CCAAT/enhancer binding protein zeta 3.7004 0.0000
5 ENSG00000249995 ECM1P2 extracellular matrix protein 1 pseudogene 2 3.7004 0.0000
6 ENSG00000251195 NA 3.7004 0.0000
7 ENSG00000267615 NA 3.7004 0.0000
8 ENSG00000264897 MIR3921 microRNA 3921 3.6773 0.0000
9 ENSG00000259180 NA 3.6716 0.0000
10 ENSG00000257005 NA 3.6699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000197008 ZNF138 zinc finger protein 138 -3.3219 0.1704
63818 ENSG00000186940 CHCHD2P9 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 9 -3.3219 1.0000
63817 ENSG00000102401 ARMCX3 armadillo repeat containing, X-linked 3 -3.3219 1.0000
63816 ENSG00000231560 CLEC12A-AS1 CLEC12A antisense RNA 1 -3.2969 0.0202
63815 ENSG00000240423 LINC00636 long intergenic non-protein coding RNA 636 -3.2925 0.4023
63814 ENSG00000197210 NA -3.2680 0.0014
63813 ENSG00000284171 NA -3.2459 0.1103
63812 ENSG00000283940 NA -3.2459 0.1103
63811 ENSG00000249997 MTCO3P7 mitochondrially encoded cytochrome c oxidase III pseudogene 7 -3.2459 0.1103
63810 ENSG00000237979 NA -3.2459 0.3953

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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