SHOGoiN Cell Methylome: GSM2042049

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042049


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M22Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255005 NA 5.5546 0.0000
2 ENSG00000207956 MIR579 microRNA 579 5.3219 0.0000
3 ENSG00000212333 RNA5SP213 RNA, 5S ribosomal pseudogene 213 5.2479 0.0000
4 ENSG00000212365 RNA5SP332 RNA, 5S ribosomal pseudogene 332 5.2479 0.0000
5 ENSG00000227779 NA 5.2479 0.0000
6 ENSG00000257121 NA 5.0444 0.0000
7 ENSG00000265484 NA 5.0444 0.0000
8 ENSG00000254187 NA 4.9069 0.0000
9 ENSG00000254947 OR8K4P olfactory receptor family 8 subfamily K member 4 pseudogene 4.8580 0.0000
10 ENSG00000256799 NA 4.8580 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000225638 PABPC1P12 poly(A) binding protein cytoplasmic 1 pseudogene 12 -4.3923 0.6300
63818 ENSG00000188056 TREML4 triggering receptor expressed on myeloid cells like 4 -4.3923 0.6300
63817 ENSG00000274680 MYO5BP1 myosin VB pseudogene 1 -4.3791 0.0311
63816 ENSG00000235016 SEMA3F-AS1 SEMA3F antisense RNA 1 -4.3658 0.0000
63815 ENSG00000263483 MTATP6P3 mitochondrially encoded ATP synthase 6 pseudogene 3 -4.3579 0.0000
63814 ENSG00000206891 RNU6-217P RNA, U6 small nuclear 217, pseudogene -4.3445 0.0151
63813 ENSG00000269028 MTRNR2L12 MT-RNR2-like 12 -4.3427 0.0000
63812 ENSG00000263914 MTND2P13 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 13 -4.3365 0.0000
63811 ENSG00000243655 NA -4.3365 0.0000
63810 ENSG00000224282 NA -4.3344 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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