SHOGoiN Cell Methylome: GSM2042049

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042049


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M22Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255005 NA 5.5546 0.0000
2 ENSG00000207956 MIR579 microRNA 579 5.3219 0.0000
3 ENSG00000212333 RNA5SP213 RNA, 5S ribosomal pseudogene 213 5.2479 0.0000
4 ENSG00000212365 RNA5SP332 RNA, 5S ribosomal pseudogene 332 5.2479 0.0000
5 ENSG00000227779 NA 5.2479 0.0000
6 ENSG00000257121 NA 5.0444 0.0000
7 ENSG00000265484 NA 5.0444 0.0000
8 ENSG00000254187 NA 4.9069 0.0000
9 ENSG00000254947 OR8K4P olfactory receptor family 8 subfamily K member 4 pseudogene 4.8580 0.0000
10 ENSG00000256799 NA 4.8580 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000206159 GYG2P1 glycogenin 2 pseudogene 1 -4.0000 1.0000
63646 ENSG00000203786 KPRP keratinocyte proline rich protein -4.0000 1.0000
63645 ENSG00000183704 SLC9B1P1 solute carrier family 9 member B1 pseudogene 1 -4.0000 1.0000
63644 ENSG00000179222 MAGED1 MAGE family member D1 -4.0000 0.2588
63643 ENSG00000104756 KCTD9 potassium channel tetramerization domain containing 9 -4.0000 0.0511
63642 ENSG00000284263 NA -3.9937 0.0000
63641 ENSG00000252815 RNU6-410P RNA, U6 small nuclear 410, pseudogene -3.9921 0.0511
63640 ENSG00000101327 PDYN prodynorphin -3.9896 0.0071
63639 ENSG00000253469 NA -3.9886 0.0098
63638 ENSG00000248358 NA -3.9886 0.2595

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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