SHOGoiN Cell Methylome: GSM2042050

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042050


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M23Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248400 ST13P12 ST13, Hsp70 interacting protein pseudogene 12 5.2095 0.0000
2 ENSG00000253493 NA 5.0875 0.0000
3 ENSG00000231328 TPT1P7 tumor protein, translationally-controlled 1 pseudogene 7 4.9069 0.0000
4 ENSG00000232131 NCOA7-AS1 NCOA7 antisense RNA 1 4.8580 0.0000
5 ENSG00000248200 NA 4.7549 0.0000
6 ENSG00000254352 NA 4.7549 0.0000
7 ENSG00000202206 RNU6-169P RNA, U6 small nuclear 169, pseudogene 4.7004 0.0000
8 ENSG00000204993 NA 4.7004 0.0000
9 ENSG00000260322 NA 4.7004 0.0000
10 ENSG00000273629 NA 4.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000250540 NA -3.8074 0.3995
63646 ENSG00000250048 LINC00603 long intergenic non-protein coding RNA 603 -3.8074 1.0000
63645 ENSG00000248949 NA -3.8074 0.2721
63644 ENSG00000248651 GCSHP1 glycine cleavage system protein H pseudogene 1 -3.8074 1.0000
63643 ENSG00000244457 ENO1P1 enolase 1 pseudogene 1 -3.8074 0.1161
63642 ENSG00000242371 IGKV1-39 immunoglobulin kappa variable 1-39 (gene/pseudogene) -3.8074 1.0000
63641 ENSG00000240458 NA -3.8074 1.0000
63640 ENSG00000240179 RPL26P3 ribosomal protein L26 pseudogene 3 -3.8074 0.3995
63639 ENSG00000237689 NA -3.8074 0.2721
63638 ENSG00000237266 LINC01810 long intergenic non-protein coding RNA 1810 -3.8074 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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