SHOGoiN Cell Methylome: GSM2042051

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042051


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M24Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231729 ARHGEF9-IT1 ARHGEF9 intronic transcript 1 5.1293 0.0000
2 ENSG00000235147 NA 4.9542 0.0000
3 ENSG00000207461 RNU6-253P RNA, U6 small nuclear 253, pseudogene 4.9305 0.0000
4 ENSG00000282879 NA 4.8580 0.0000
5 ENSG00000147592 LACTB2 lactamase beta 2 4.8074 0.0000
6 ENSG00000231500 RPS18 ribosomal protein S18 4.8074 0.0000
7 ENSG00000235196 NA 4.7549 0.0000
8 ENSG00000248114 NA 4.7549 0.0000
9 ENSG00000252810 RNU6-345P RNA, U6 small nuclear 345, pseudogene 4.7549 0.0000
10 ENSG00000201744 RNU6-34P RNA, U6 small nuclear 34, pseudogene 4.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000133065 SLC41A1 solute carrier family 41 member 1 -3.7847 0.0001
63646 ENSG00000229595 NA -3.7806 0.0085
63645 ENSG00000257582 LINC01475 long intergenic non-protein coding RNA 1475 -3.7787 0.0000
63644 ENSG00000200334 NA -3.7737 0.0056
63643 ENSG00000168769 TET2 tet methylcytosine dioxygenase 2 -3.7631 0.0001
63642 ENSG00000202089 RNU6-1306P RNA, U6 small nuclear 1306, pseudogene -3.7595 0.0025
63641 ENSG00000159186 NA -3.7539 0.1663
63640 ENSG00000186907 RTN4RL2 reticulon 4 receptor like 2 -3.7510 0.0000
63639 ENSG00000259111 NA -3.7438 0.0003
63638 ENSG00000235303 NA -3.7429 0.0195

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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