SHOGoiN Cell Methylome: GSM2042051

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042051


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6020500-761Sequence Read ArchiveSRP062328SRP062328_M24Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231729 ARHGEF9-IT1 ARHGEF9 intronic transcript 1 5.1293 0.0000
2 ENSG00000235147 NA 4.9542 0.0000
3 ENSG00000207461 RNU6-253P RNA, U6 small nuclear 253, pseudogene 4.9305 0.0000
4 ENSG00000282879 NA 4.8580 0.0000
5 ENSG00000147592 LACTB2 lactamase beta 2 4.8074 0.0000
6 ENSG00000231500 RPS18 ribosomal protein S18 4.8074 0.0000
7 ENSG00000235196 NA 4.7549 0.0000
8 ENSG00000248114 NA 4.7549 0.0000
9 ENSG00000252810 RNU6-345P RNA, U6 small nuclear 345, pseudogene 4.7549 0.0000
10 ENSG00000201744 RNU6-34P RNA, U6 small nuclear 34, pseudogene 4.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000256618 MTRNR2L1 MT-RNR2-like 1 -4.1442 0.0000
63818 ENSG00000242482 RN7SL392P RNA, 7SL, cytoplasmic 392, pseudogene -4.1287 0.0705
63817 ENSG00000237055 MTCO1P48 mitochondrially encoded cytochrome c oxidase I pseudogene 48 -4.1192 0.0027
63816 ENSG00000271412 PRR13P3 proline rich 13 pseudogene 3 -4.0926 0.0000
63815 ENSG00000250699 NA -4.0926 0.0000
63814 ENSG00000179598 PLD6 phospholipase D family member 6 -4.0914 0.0000
63813 ENSG00000284247 MIR2682 microRNA 2682 -4.0875 0.3933
63812 ENSG00000273492 NA -4.0875 0.0692
63811 ENSG00000271615 ACTG1P22 actin gamma 1 pseudogene 22 -4.0875 0.0692
63810 ENSG00000261098 NA -4.0875 0.3933

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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