SHOGoiN Cell Methylome: GSM2042052

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042052


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6020500-761Sequence Read ArchiveSRP062328SRP062328_M25Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252072 RNA5SP320 RNA, 5S ribosomal pseudogene 320 6.6147 0.0000
2 ENSG00000143469 SYT14 synaptotagmin 14 6.4919 0.0000
3 ENSG00000259636 NA 6.3399 0.0000
4 ENSG00000232079 LINC01697 long intergenic non-protein coding RNA 1697 6.2288 0.0000
5 ENSG00000242759 LINC00882 long intergenic non-protein coding RNA 882 6.1497 0.0000
6 ENSG00000279469 NA 6.0875 0.0000
7 ENSG00000226454 NA 6.0661 0.0000
8 ENSG00000184860 SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 5.9307 0.0000
9 ENSG00000258066 NA 5.8826 0.0000
10 ENSG00000185522 LMNTD2 lamin tail domain containing 2 5.8688 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000212144 U8 small nucleolar RNA -5.2657 0.0018
63818 ENSG00000128408 RIBC2 RIB43A domain with coiled-coils 2 -5.2624 0.0000
63817 ENSG00000207500 SNORD102 small nucleolar RNA, C/D box 102 -5.2539 0.0000
63816 ENSG00000207051 SNORA27 small nucleolar RNA, H/ACA box 27 -5.2539 0.0000
63815 ENSG00000276544 RN7SL453P RNA, 7SL, cytoplasmic 453, pseudogene -5.2479 0.0457
63814 ENSG00000268628 NA -5.2479 0.0000
63813 ENSG00000267204 LINC01782 long intergenic non-protein coding RNA 1782 -5.2479 0.0457
63812 ENSG00000267133 NA -5.2479 0.0457
63811 ENSG00000261866 NA -5.2479 0.0000
63810 ENSG00000253964 NA -5.2479 0.0457

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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