SHOGoiN Cell Methylome: GSM2042052

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042052


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M25Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252072 RNA5SP320 RNA, 5S ribosomal pseudogene 320 6.6147 0.0000
2 ENSG00000143469 SYT14 synaptotagmin 14 6.4919 0.0000
3 ENSG00000259636 NA 6.3399 0.0000
4 ENSG00000232079 LINC01697 long intergenic non-protein coding RNA 1697 6.2288 0.0000
5 ENSG00000242759 LINC00882 long intergenic non-protein coding RNA 882 6.1497 0.0000
6 ENSG00000279469 NA 6.0875 0.0000
7 ENSG00000226454 NA 6.0661 0.0000
8 ENSG00000184860 SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 5.9307 0.0000
9 ENSG00000258066 NA 5.8826 0.0000
10 ENSG00000185522 LMNTD2 lamin tail domain containing 2 5.8688 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000252346 RNA5SP121 RNA, 5S ribosomal pseudogene 121 -4.9069 0.0094
63646 ENSG00000252231 RNA5SP67 RNA, 5S ribosomal pseudogene 67 -4.9069 0.0094
63645 ENSG00000251352 NA -4.9069 0.1063
63644 ENSG00000242012 NA -4.9069 0.1063
63643 ENSG00000236390 NA -4.9069 0.0000
63642 ENSG00000235009 LINC01883 long intergenic non-protein coding RNA 1883 -4.9069 0.0005
63641 ENSG00000228082 NA -4.9069 0.0094
63640 ENSG00000227632 NA -4.9069 0.0000
63639 ENSG00000224296 MRPL49P1 mitochondrial ribosomal protein L49 pseudogene 1 -4.9069 0.1063
63638 ENSG00000219553 NA -4.9069 0.1063

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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