SHOGoiN Cell Methylome: GSM2042053

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042053


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6020500-761Sequence Read ArchiveSRP062328SRP062328_M26Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000178586 OR6B3 olfactory receptor family 6 subfamily B member 3 6.5699 0.0000
2 ENSG00000207016 SNORA36C small nucleolar RNA, H/ACA box 36C 6.4919 0.0000
3 ENSG00000183161 FANCF Fanconi anemia complementation group F 6.3750 0.0000
4 ENSG00000204599 TRIM39 tripartite motif containing 39 6.3038 0.0000
5 ENSG00000248167 TRIM39-RPP21 TRIM39-RPP21 readthrough 6.3038 0.0000
6 ENSG00000270604 HCG17 HLA complex group 17 (non-protein coding) 6.3038 0.0000
7 ENSG00000137288 UQCC2 ubiquinol-cytochrome c reductase complex assembly factor 2 6.2854 0.0000
8 ENSG00000206989 SNORD63 small nucleolar RNA, C/D box 63 6.2854 0.0000
9 ENSG00000222937 SNORD63B small nucleolar RNA, C/D box 63B 6.2854 0.0000
10 ENSG00000266509 MIR3934 microRNA 3934 6.2854 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000145063 NA -5.5502 0.0000
63818 ENSG00000261717 NA -5.5468 0.0000
63817 ENSG00000166822 TMEM170A transmembrane protein 170A -5.5468 0.0000
63816 ENSG00000106780 MEGF9 multiple EGF like domains 9 -5.5439 0.0000
63815 ENSG00000051620 HEBP2 heme binding protein 2 -5.5380 0.0000
63814 ENSG00000224661 NA -5.5379 0.0000
63813 ENSG00000272050 NA -5.5371 0.0003
63812 ENSG00000130700 GATA5 GATA binding protein 5 -5.5371 0.0003
63811 ENSG00000275390 NA -5.5236 0.0000
63810 ENSG00000274310 NA -5.5236 0.0198

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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