SHOGoiN Cell Methylome: GSM2042053

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042053


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M26Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000178586 OR6B3 olfactory receptor family 6 subfamily B member 3 6.5699 0.0000
2 ENSG00000207016 SNORA36C small nucleolar RNA, H/ACA box 36C 6.4919 0.0000
3 ENSG00000183161 FANCF Fanconi anemia complementation group F 6.3750 0.0000
4 ENSG00000204599 TRIM39 tripartite motif containing 39 6.3038 0.0000
5 ENSG00000248167 TRIM39-RPP21 TRIM39-RPP21 readthrough 6.3038 0.0000
6 ENSG00000270604 HCG17 HLA complex group 17 (non-protein coding) 6.3038 0.0000
7 ENSG00000137288 UQCC2 ubiquinol-cytochrome c reductase complex assembly factor 2 6.2854 0.0000
8 ENSG00000206989 SNORD63 small nucleolar RNA, C/D box 63 6.2854 0.0000
9 ENSG00000222937 SNORD63B small nucleolar RNA, C/D box 63B 6.2854 0.0000
10 ENSG00000266509 MIR3934 microRNA 3934 6.2854 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000177283 FZD8 frizzled class receptor 8 -5.1857 0.0000
63646 ENSG00000113657 DPYSL3 dihydropyrimidinase like 3 -5.1853 0.0000
63645 ENSG00000250020 NA -5.1799 0.0000
63644 ENSG00000175879 HOXD8 homeobox D8 -5.1743 0.0000
63643 ENSG00000280097 NA -5.1699 0.0001
63642 ENSG00000280090 OR8B4 olfactory receptor family 8 subfamily B member 4 (gene/pseudogene) -5.1699 0.0719
63641 ENSG00000278128 NA -5.1699 0.0719
63640 ENSG00000274049 INO80B-WBP1 INO80B-WBP1 readthrough (NMD candidate) -5.1699 0.0001
63639 ENSG00000272694 NA -5.1699 0.0027
63638 ENSG00000260634 NA -5.1699 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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