SHOGoiN Cell Methylome: GSM2042054

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042054


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M27Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000017483 SLC38A5 solute carrier family 38 member 5 4.3219 0.0000
2 ENSG00000200769 NA 4.1699 0.0000
3 ENSG00000231259 NA 4.0875 0.0000
4 ENSG00000260161 MTCYBP28 mitochondrially encoded cytochrome b pseudogene 28 4.0875 0.0000
5 ENSG00000266931 NA 4.0875 0.0000
6 ENSG00000201298 RNU6-1164P RNA, U6 small nuclear 1164, pseudogene 4.0000 0.0000
8 ENSG00000207711 MIR525 microRNA 525 3.8074 0.0000
9 ENSG00000207771 MIR550A1 microRNA 550a-1 3.8074 0.0000
10 ENSG00000226339 RPS26P56 ribosomal protein S26 pseudogene 56 3.8074 0.0000
63638 ENSG00000219355 RPL31P52 ribosomal protein L31 pseudogene 52 -3.0000 0.0313

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000230231 FMO7P flavin containing monooxygenase 7 pseudogene -3.0000 0.6196
63646 ENSG00000229347 NA -3.0000 1.0000
63645 ENSG00000228398 HMGN2P25 high mobility group nucleosomal binding domain 2 pseudogene 25 -3.0000 1.0000
63644 ENSG00000228043 NA -3.0000 0.0744
63643 ENSG00000226058 NA -3.0000 1.0000
63642 ENSG00000225462 FDPSP1 farnesyl diphosphate synthase pseudogene 1 -3.0000 0.6196
63641 ENSG00000224406 LINC02052 long intergenic non-protein coding RNA 2052 -3.0000 0.2713
63640 ENSG00000223404 LINC00397 long intergenic non-protein coding RNA 397 -3.0000 1.0000
63639 ENSG00000222426 RNU2-50P RNA, U2 small nuclear 50, pseudogene -3.0000 1.0000
63638 ENSG00000219355 RPL31P52 ribosomal protein L31 pseudogene 52 -3.0000 0.0313

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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