SHOGoiN Cell Methylome: GSM2042055

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042055


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6020500-761Sequence Read ArchiveSRP062328SRP062328_M28Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliumBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252914 RNU6-789P RNA, U6 small nuclear 789, pseudogene 3.9069 0.0000
2 ENSG00000212167 RNU6-763P RNA, U6 small nuclear 763, pseudogene 3.5850 0.0000
3 ENSG00000224540 NA 3.5850 0.0000
4 ENSG00000236610 SOCS5P1 suppressor of cytokine signaling 5 pseudogene 1 3.5850 0.0000
5 ENSG00000239149 SNORA59A small nucleolar RNA, H/ACA box 59A 3.5850 0.0000
6 ENSG00000242094 FOXP1-IT1 FOXP1 intronic transcript 1 3.4594 0.0000
7 ENSG00000257852 NA 3.4594 0.0000
8 ENSG00000259727 NA 3.4594 0.0000
9 ENSG00000267583 NA 3.4594 0.0000
10 ENSG00000277855 NA 3.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000133661 SFTPD surfactant protein D -3.1699 1.0000
63818 ENSG00000130772 MED18 mediator complex subunit 18 -3.1699 0.3915
63817 ENSG00000109084 TMEM97 transmembrane protein 97 -3.1699 1.0000
63816 ENSG00000148288 GBGT1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) -3.1487 0.0059
63815 ENSG00000274092 NA -3.1284 0.0002
63814 ENSG00000249780 NA -3.0850 0.3915
63813 ENSG00000255483 NA -3.0799 0.0000
63812 ENSG00000160401 CFAP157 cilia and flagella associated protein 157 -3.0793 0.1751
63811 ENSG00000259295 CSPG4P12 chondroitin sulfate proteoglycan 4 pseudogene 12 -3.0237 0.0420
63810 ENSG00000279946 NA -3.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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