SHOGoiN Cell Methylome: GSM2042056

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042056


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M29Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000266274 RN7SL138P RNA, 7SL, cytoplasmic 138, pseudogene 4.8580 0.0000
2 ENSG00000173389 IQCF1 IQ motif containing F1 4.7549 0.0000
3 ENSG00000228438 NA 4.7004 0.0000
4 ENSG00000177352 CCDC71 coiled-coil domain containing 71 4.6439 0.0000
5 ENSG00000185909 KLHDC8B kelch domain containing 8B 4.6439 0.0000
6 ENSG00000270776 NA 4.6439 0.0000
7 ENSG00000214108 TPT1P5 tumor protein, translationally-controlled 1 pseudogene 5 4.5850 0.0000
8 ENSG00000227806 OR5W1P olfactory receptor family 5 subfamily W member 1 pseudogene 4.5850 0.0000
9 ENSG00000283378 NA 4.5850 0.0000
10 ENSG00000048405 ZNF800 zinc finger protein 800 4.5236 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63647 ENSG00000249192 MTND3P25 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 25 -3.7956 0.0000
63646 ENSG00000278783 MIR6071 microRNA 6071 -3.7860 0.0059
63645 ENSG00000167494 NOS2P2 nitric oxide synthase 2 pseudogene 2 -3.7816 0.0464
63644 ENSG00000225630 MTND2P28 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 28 -3.7758 0.0000
63643 ENSG00000198868 MTND4LP30 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 30 -3.7717 0.0000
63642 ENSG00000253614 NA -3.7692 0.0000
63641 ENSG00000259309 NA -3.7664 0.0089
63640 ENSG00000215179 MAPK6PS4 mitogen-activated protein kinase 6 pseudogene 4 -3.7539 0.2670
63639 ENSG00000259023 LINC00524 long intergenic non-protein coding RNA 524 -3.7273 0.0000
63638 ENSG00000115317 HTRA2 HtrA serine peptidase 2 -3.7267 0.0029

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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