SHOGoiN Cell Methylome: GSM2042056

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042056


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M29Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000266274 RN7SL138P RNA, 7SL, cytoplasmic 138, pseudogene 4.8580 0.0000
2 ENSG00000173389 IQCF1 IQ motif containing F1 4.7549 0.0000
3 ENSG00000228438 NA 4.7004 0.0000
4 ENSG00000177352 CCDC71 coiled-coil domain containing 71 4.6439 0.0000
5 ENSG00000185909 KLHDC8B kelch domain containing 8B 4.6439 0.0000
6 ENSG00000270776 NA 4.6439 0.0000
7 ENSG00000214108 TPT1P5 tumor protein, translationally-controlled 1 pseudogene 5 4.5850 0.0000
8 ENSG00000227806 OR5W1P olfactory receptor family 5 subfamily W member 1 pseudogene 4.5850 0.0000
9 ENSG00000283378 NA 4.5850 0.0000
10 ENSG00000048405 ZNF800 zinc finger protein 800 4.5236 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000187513 GJA4 gap junction protein alpha 4 -4.0875 0.3912
63818 ENSG00000126016 AMOT angiomotin -4.0875 0.3912
63817 ENSG00000122861 PLAU plasminogen activator, urokinase -4.0875 0.3912
63816 ENSG00000240409 MTATP8P1 mitochondrially encoded ATP synthase 8 pseudogene 1 -4.0858 0.0000
63815 ENSG00000248527 MTATP6P1 mitochondrially encoded ATP synthase 6 pseudogene 1 -4.0782 0.0000
63814 ENSG00000255823 MTRNR2L8 MT-RNR2-like 8 -4.0566 0.0000
63813 ENSG00000198744 MTCO3P12 mitochondrially encoded cytochrome c oxidase III pseudogene 12 -4.0541 0.0000
63812 ENSG00000198889 DCAF12L1 DDB1 and CUL4 associated factor 12 like 1 -4.0323 0.0068
63811 ENSG00000110315 RNF141 ring finger protein 141 -4.0251 0.0000
63810 ENSG00000139800 ZIC5 Zic family member 5 -4.0250 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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