SHOGoiN Cell Methylome: GSM2042057

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042057


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M30Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000278636 Metazoan signal recognition particle RNA 4.5236 0.0000
2 ENSG00000274367 NA 4.4594 0.0000
3 ENSG00000201573 Y RNA 4.3219 0.0000
4 ENSG00000226388 ELL2P4 elongation factor for RNA polymerase II 2 pseudogene 4 4.3219 0.0000
5 ENSG00000243546 RN7SL108P RNA, 7SL, cytoplasmic 108, pseudogene 4.3219 0.0000
6 ENSG00000273675 NA 4.3219 0.0000
7 ENSG00000160284 SPATC1L spermatogenesis and centriole associated 1 like 4.2479 0.0000
8 ENSG00000222561 RNU6-1025P RNA, U6 small nuclear 1025, pseudogene 4.2479 0.0000
9 ENSG00000228404 NA 4.2479 0.0000
10 ENSG00000254335 CDH12P1 cadherin 12 pseudogene 1 4.2479 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63819 ENSG00000249504 PCDHA14 protocadherin alpha 14 pseudogene -3.7004 0.0000
63818 ENSG00000239855 IGKV1-6 immunoglobulin kappa variable 1-6 -3.7004 0.1645
63817 ENSG00000238005 NA -3.7004 0.6231
63816 ENSG00000237520 NA -3.7004 0.6231
63815 ENSG00000237227 NA -3.7004 0.0131
63814 ENSG00000235215 NA -3.7004 0.0459
63813 ENSG00000234936 NA -3.7004 0.0131
63812 ENSG00000234064 PRAMEF29P PRAME family member 29, pseudogene -3.7004 0.6231
63811 ENSG00000232900 NA -3.7004 0.6231
63810 ENSG00000229717 NA -3.7004 0.6231

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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