SHOGoiN Cell Transcriptome: Project ID SRP033139


No.Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleProject DescriptionProject Submission DateOrganization NameStable Contact InformationReference Submission StatusReference AuthorsReference TitleReference Pubmed IdAssay TypeAssay FactorSample IdSHOGoiN Cell IdSource Cell TypeSource OrganismRace Or StrainAge Or StageSource Tissue Or OrganSource Cell KaryotypeCell LineageOrganism Genetic InformationHealth StatusSource ProviderAssay TechnologyAssay Detection InstrumentationAssay Detection Instrument VendorAssessed MaterialSource Cell FormatSource Cell Preparation MethodSource Cell Identidication MethodSource Cell TreatmentData IdData TypeData Processing MethodData Processing Software And VersionData Normalization MethodData Normalization Software Name And VersionData Analytical Software And VersionReference Sequence SourceGenome Annotation Ref
1

GSM1268907

1010201000000000000000-189Sequence Read ArchiveSRP033139SRP033139_T1Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010201000000000000000-189GSM12689071010201000000000000000-189Neuron (Cerebral cortex)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033318SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
2

GSM1268908

1010201000000000000000-189Sequence Read ArchiveSRP033139SRP033139_T2Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010201000000000000000-189GSM12689081010201000000000000000-189Neuron (Cerebral cortex)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033319SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
3

GSM1268910

1010201000000000000000-189Sequence Read ArchiveSRP033139SRP033139_T3Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010201000000000000000-189GSM12689101010201000000000000000-189Neuron (Cerebral cortex)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033321SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
4

GSM1268915

1010201000000000000000-189Sequence Read ArchiveSRP033139SRP033139_T4Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010201000000000000000-189GSM12689151010201000000000000000-189Neuron (Cerebral cortex)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033322SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
5

GSM1268917

1010201000000000000000-189Sequence Read ArchiveSRP033139SRP033139_T5Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010201000000000000000-189GSM12689171010201000000000000000-189Neuron (Cerebral cortex)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033323SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
6

GSM1268911

1010201000000000000000-189Sequence Read ArchiveSRP033139SRP033139_T6Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010201000000000000000-189GSM12689111010201000000000000000-189Neuron (Cerebral cortex)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033324SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
7

GSM1268912

1010201000000000000000-189Sequence Read ArchiveSRP033139SRP033139_T7Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010201000000000000000-189GSM12689121010201000000000000000-189Neuron (Cerebral cortex)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033325SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
8

GSM1268913

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T8Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689131010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033326SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
9

GSM1268914

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T9Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689141010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033327SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
10

GSM1268916

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T10Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689161010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033328SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
11

GSM1268918

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T11Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689181010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033329SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
12

GSM1268919

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T12Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689191010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033330SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
13

GSM1268920

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T13Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689201010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033331SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
14

GSM1268921

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T14Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689211010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, primary culturedSRR1033332SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
15

GSM1268925

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T15Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689251010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, dissociatedSRR1033336SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
16

GSM1268926

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T16Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689261010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, dissociatedSRR1033337SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
17

GSM1268927

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T17Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689271010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, dissociatedSRR1033338SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
18

GSM1268928

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T18Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689281010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, dissociatedSRR1033339SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
19

GSM1268929

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T19Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689291010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2000IlluminapolyA RNASingle cell, dissociatedSRR1033340SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
20

GSM1268930

1010201000000000000000-189Sequence Read ArchiveSRP033139SRP033139_T20Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010201000000000000000-189GSM12689301010201000000000000000-189Neuron (Cerebral cortex)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2500IlluminapolyA RNASingle cell, dissociatedSRR1033341SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
21

GSM1268931

1010201000000000000000-189Sequence Read ArchiveSRP033139SRP033139_T21Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010201000000000000000-189GSM12689311010201000000000000000-189Neuron (Cerebral cortex)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2500IlluminapolyA RNASingle cell, dissociatedSRR1033342SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
22

GSM1268932

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T22Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689321010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2500IlluminapolyA RNASingle cell, dissociatedSRR1033343SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
23

GSM1268933

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T23Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689331010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2500IlluminapolyA RNASingle cell, dissociatedSRR1033344SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9
24

GSM1268934

1010202030000000000000-189Sequence Read ArchiveSRP033139SRP033139_T24Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissuehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5252512-Jan-14University of PennsylvaniaJunhyong KimPublishedLovatt D, Ruble BK, Lee J, Dueck H et al.Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.24412976Transcriptome1010202030000000000000-189GSM12689341010202030000000000000-189Neuron (Hippocampus)MouseC57BL/6P4 or 14BrainRNA-seqHiSeq 2500IlluminapolyA RNASingle cell, dissociatedSRR1033345SequenceIllumina Casava 1.8.1 and 1.8.2 softwaremm9