SHOGoiN Cell Transcriptome: Project ID SRP059549
| No. | Expression Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||||||||||||||||||||||||||||||||||
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| Project Title | Project Description | Project Submission Date | Organization Name | Stable Contact Information | Reference Submission Status | Reference Authors | Reference Title | Reference Pubmed Id | Assay Type | Assay Factor | Sample Id | SHOGoiN Cell Id | Source Cell Type | Source Organism | Race Or Strain | Age Or Stage | Source Tissue Or Organ | Source Cell Karyotype | Cell Lineage | Organism Genetic Information | Health Status | Source Provider | Assay Technology | Assay Detection Instrumentation | Assay Detection Instrument Vendor | Assessed Material | Source Cell Format | Source Cell Preparation Method | Source Cell Identidication Method | Source Cell Treatment | Data Id | Data Type | Data Processing Method | Data Processing Software And Version | Data Normalization Method | Data Normalization Software Name And Version | Data Analytical Software And Version | Reference Sequence Source | Genome Annotation Ref | ||||||
| 1 |  GSM1713184 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T1 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713184 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C57BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064513 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 2 |  GSM1713185 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T2 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713185 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C58BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064514 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 3 |  GSM1713186 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T3 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713186 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C59BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064515 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 4 |  GSM1713187 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T4 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713187 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C60BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064516 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 5 |  GSM1713188 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T5 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713188 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C61BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064517 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 6 |  GSM1713189 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T6 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713189 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C62BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064518 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 7 |  GSM1713190 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T7 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713190 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C63BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064519 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 8 |  GSM1713191 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T8 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713191 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C64BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064520 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 9 |  GSM1713192 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T9 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713192 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C65BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064521 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 10 |  GSM1713193 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T10 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713193 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C66BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064522 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 11 |  GSM1713194 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T11 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713194 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C67BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064523 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 12 |  GSM1713195 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T12 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713195 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C68BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064524 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 13 |  GSM1713196 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T13 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713196 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C69BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064525 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 14 |  GSM1713197 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T14 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713197 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C70BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064526 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||
| 15 |  GSM1713198 | 6000001010000000000000-734 | Sequence Read Archive | SRP059549 | SRP059549_T15 | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69926 | 16-Jun-15 | University of Minnesota-Twin Cities | Brenda M Ogle, ogle@umn.edu | Published | Freeman BT, Jung PJ, Ogle BM | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 26997336 | Transcriptome | 6000001010000000000000-734 | GSM1713198 | 6000001010000000000000-734 | Mesenchymal Stem Cell (MSC) | Mouse | C71BL, male | 3 mo | Bone marrow | Georgia Reagents University, Augusta, GA | RNA-Seq | MiSeq | Illumina | Total RNA | Single cell, cultured (passages: 6-11) | Fluidigm C1 chip | SRR2064527 | Sequence | Tophat2.0.12 | FPKM | Cufflinks2.2.1 | mm10 | |||||||||