SHOGoiN Cell Transcriptome: Project ID SRP059940


No.Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleProject DescriptionProject Submission DateOrganization NameStable Contact InformationReference Submission StatusReference AuthorsReference TitleReference Pubmed IdAssay TypeAssay FactorSample IdSHOGoiN Cell IdSource Cell TypeSource OrganismRace Or StrainAge Or StageSource Tissue Or OrganSource Cell KaryotypeCell LineageOrganism Genetic InformationHealth StatusSource ProviderAssay TechnologyAssay Detection InstrumentationAssay Detection Instrument VendorAssessed MaterialSource Cell FormatSource Cell Preparation MethodSource Cell Identidication MethodSource Cell TreatmentData IdData TypeData Processing MethodData Processing Software And VersionData Normalization MethodData Normalization Software Name And VersionData Analytical Software And VersionReference Sequence SourceGenome Annotation Ref
1

GSM1725710

9072100-796Sequence Read ArchiveSRP059940SRP059940_T1Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257109072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: G9a+/+RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080256SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
2

GSM1725711

9072100-796Sequence Read ArchiveSRP059940SRP059940_T2Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257119072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: G9a-/-RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080257SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
3

GSM1725712

9072100-796Sequence Read ArchiveSRP059940SRP059940_T3Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257129072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: G9a+/+RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080258SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
4

GSM1725713

9072100-796Sequence Read ArchiveSRP059940SRP059940_T4Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257139072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: G9a-/-RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080259SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
5

GSM1725714

9072100-796Sequence Read ArchiveSRP059940SRP059940_T5Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257149072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: G9a-/-RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080260SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
6

GSM1725715

9072100-796Sequence Read ArchiveSRP059940SRP059940_T6Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257159072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: G9a+/+RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080261SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
7

GSM1725716

9072100-796Sequence Read ArchiveSRP059940SRP059940_T7Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257169072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: Ezh+/+RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080262SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
8

GSM1725717

9072100-796Sequence Read ArchiveSRP059940SRP059940_T8Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257179072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: Ezh-/-RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080263SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
9

GSM1725718

9072100-796Sequence Read ArchiveSRP059940SRP059940_T9Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257189072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: Ezh+/+RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080264SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
10

GSM1725719

9072100-796Sequence Read ArchiveSRP059940SRP059940_T10Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257199072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: Ezh+/+RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080265SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
11

GSM1725720

9072100-796Sequence Read ArchiveSRP059940SRP059940_T11Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257209072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: Ezh-/-RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080266SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
12

GSM1725721

9072100-796Sequence Read ArchiveSRP059940SRP059940_T12Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257219072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: Ezh-/-RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080267SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
13

GSM1725722

9072100-796Sequence Read ArchiveSRP059940SRP059940_T13Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257229072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: G9a+/+RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080268SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10
14

GSM1725723

9072100-796Sequence Read ArchiveSRP059940SRP059940_T14Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmenthttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7035528-Jun-15University of CambridgeCharles BradshawPublishedZylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al.Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.26551560Transcriptome9072100-796GSM17257239072100-796Epiblast cellMouseE6.25Early embryonic tissuegenotype: G9a-/-RNA-SeqHiSeq 2500IlluminaTotal RNASingle cell, dissected (Tesar et al., 2007)SRR2080269SequenceTopHat2, HTSeq-countRead counts per ENSEMBL transcript (Anders et al., 2014)GRCm38/mm10