SHOGoiN Cell Transcriptome: Project ID SRP059940
| No. | Expression Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||||||||||||||||||||||||||||||||||
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| Project Title | Project Description | Project Submission Date | Organization Name | Stable Contact Information | Reference Submission Status | Reference Authors | Reference Title | Reference Pubmed Id | Assay Type | Assay Factor | Sample Id | SHOGoiN Cell Id | Source Cell Type | Source Organism | Race Or Strain | Age Or Stage | Source Tissue Or Organ | Source Cell Karyotype | Cell Lineage | Organism Genetic Information | Health Status | Source Provider | Assay Technology | Assay Detection Instrumentation | Assay Detection Instrument Vendor | Assessed Material | Source Cell Format | Source Cell Preparation Method | Source Cell Identidication Method | Source Cell Treatment | Data Id | Data Type | Data Processing Method | Data Processing Software And Version | Data Normalization Method | Data Normalization Software Name And Version | Data Analytical Software And Version | Reference Sequence Source | Genome Annotation Ref | ||||||
| 1 |  GSM1725710 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T1 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725710 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: G9a+/+ | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080256 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 2 |  GSM1725711 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T2 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725711 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: G9a-/- | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080257 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 3 |  GSM1725712 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T3 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725712 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: G9a+/+ | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080258 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 4 |  GSM1725713 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T4 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725713 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: G9a-/- | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080259 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 5 |  GSM1725714 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T5 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725714 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: G9a-/- | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080260 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 6 |  GSM1725715 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T6 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725715 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: G9a+/+ | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080261 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 7 |  GSM1725716 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T7 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725716 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: Ezh+/+ | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080262 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 8 |  GSM1725717 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T8 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725717 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: Ezh-/- | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080263 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 9 |  GSM1725718 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T9 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725718 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: Ezh+/+ | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080264 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 10 |  GSM1725719 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T10 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725719 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: Ezh+/+ | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080265 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 11 |  GSM1725720 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T11 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725720 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: Ezh-/- | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080266 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 12 |  GSM1725721 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T12 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725721 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: Ezh-/- | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080267 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 13 |  GSM1725722 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T13 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725722 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: G9a+/+ | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080268 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||
| 14 |  GSM1725723 | 7030023000000000000000-796 | Sequence Read Archive | SRP059940 | SRP059940_T14 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70355 | 28-Jun-15 | University of Cambridge | Charles Bradshaw | Published | Zylicz JJ, Dietmann S, G_nesdogan U, Hackett JA et al. | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development. | 26551560 | Transcriptome | 7030023000000000000000-796 | GSM1725723 | 7030023000000000000000-796 | Epiblast cell | Mouse | E6.25 | Early embryonic tissue | genotype: G9a-/- | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell, dissected (Tesar et al., 2007) | SRR2080269 | Sequence | TopHat2, HTSeq-count | Read counts per ENSEMBL transcript (Anders et al., 2014) | GRCm38/mm10 | ||||||||||||