SHOGoiN Cell Transcriptome: Project ID SRP067892


No.Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleProject DescriptionProject Submission DateOrganization NameStable Contact InformationReference Submission StatusReference AuthorsReference TitleReference Pubmed IdAssay TypeAssay FactorSample IdSHOGoiN Cell IdSource Cell TypeSource OrganismRace Or StrainAge Or StageSource Tissue Or OrganSource Cell KaryotypeCell LineageOrganism Genetic InformationHealth StatusSource ProviderAssay TechnologyAssay Detection InstrumentationAssay Detection Instrument VendorAssessed MaterialSource Cell FormatSource Cell Preparation MethodSource Cell Identidication MethodSource Cell TreatmentData IdData TypeData Processing MethodData Processing Software And VersionData Normalization MethodData Normalization Software Name And VersionData Analytical Software And VersionReference Sequence SourceGenome Annotation Ref
1

GSM1987570

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T1Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875703120102010200000000000-082Lgr5-positive intestinal cell (CBC cell)MouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), 5 day tracedRNA-SeqHiSeq 2500IlluminaTotal RNASingle cellSRR3063721Sequencemm10
2

GSM1987571

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T2Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875713120102010200000000000-082Lgr5-positive intestinal cell (CBC cell)MouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), 5 day tracedRNA-SeqHiSeq 2500IlluminaTotal RNASingle cellSRR3063722Sequencemm10
3

GSM1987573

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T3Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875733120102010200000000000-082Lgr5-positive intestinal cell (CBC cell)MouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), 5 day tracedRNA-SeqHiSeq 2500IlluminaTotal RNASingle cellSRR3063723Sequencemm10
4

GSM1987574

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T4Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875743120102010200000000000-082Lgr5-positive intestinal cell (CBC cell)MouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), 5 day tracedRNA-SeqHiSeq 2500IlluminaTotal RNASingle cellSRR3063724Sequencemm10
5

GSM1987575

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T5Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875753120102010200000000000-082Lgr5-positive intestinal cell (CBC cell)MouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), 5 day tracedRNA-SeqHiSeq 2500IlluminaTotal RNASingle cellSRR3063725Sequencemm10
6

GSM1987576

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T6Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875763120102010200000000000-082Lgr5-positive intestinal cell (CBC cell), CD24+ fractionMouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), 3 week tracedRNA-SeqNextSeq 500IlluminaTotal RNASingle cellSRR3063726Sequencemm10
7

GSM1987577

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T7Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875773120102010200000000000-0823 week CD24+ cellMouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), non-tracedRNA-SeqNextSeq 500IlluminaTotal RNASingle cellSRR3063727Sequencemm10
8

GSM1987578

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T8Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875783120102010200000000000-082Lgr5-positive intestinal cell (CBC cell), CD24+ fractionMouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), 8 week tracedRNA-SeqNextSeq 500IlluminaTotal RNASingle cellSRR3063728Sequencemm10
9

GSM1987579

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T9Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875793120102010200000000000-082Lgr5-positive intestinal cell (CBC cell)MouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), 8 week tracedRNA-SeqNextSeq 500IlluminaTotal RNASingle cellSRR3063729Sequencemm10
10

GSM1987581

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T10Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875813120102010200000000000-082Lgr5-positive intestinal cell (CBC cell), CD24+ fractionMouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), 8 week tracedRNA-SeqNextSeq 500IlluminaTotal RNASingle cellSRR3063730Sequencemm10
11

GSM1987582

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T11Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875823120102010200000000000-082Lgr5-positive intestinal cell (CBC cell), CD24+ fractionMouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), 8 week tracedRNA-SeqNextSeq 500IlluminaTotal RNASingle cellSRR3063731Sequencemm10
12

GSM1987583

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T12Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875833120102010200000000000-0828 week CD24+ cellMouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), non-tracedRNA-SeqNextSeq 500IlluminaTotal RNASingle cellSRR3063732Sequencemm10
13

GSM1987584

3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T13Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineagehttp://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7640829-Des-15Hubrecht InstituteKay Wiebrands, k.wiebrands@hubrecht.euPublishedGr_n D, Muraro MJ, Boisset JC, Wiebrands K et al.De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.27345837Transcriptome3120102010200000000000-082GSM19875843120102010200000000000-0828 week CD24+ cellMouseLgr5-CreERT2 C57BL6/J3 moSmall intestineTamoxifen injection (0.4mg), non-tracedRNA-SeqNextSeq 500IlluminaTotal RNASingle cellSRR3063733Sequencemm10