SHOGoiN Cell Transcriptome: Project ID SRP125954


No.Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleProject DescriptionProject Submission DateOrganization NameStable Contact InformationReference Submission StatusReference AuthorsReference TitleReference Pubmed IdAssay TypeAssay FactorSample IdSHOGoiN Cell IdSource Cell TypeSource OrganismRace Or StrainAge Or StageSource Tissue Or OrganSource Cell KaryotypeCell LineageOrganism Genetic InformationHealth StatusSource ProviderAssay TechnologyAssay Detection InstrumentationAssay Detection Instrument VendorAssessed MaterialSource Cell FormatSource Cell Preparation MethodSource Cell Identidication MethodSource Cell TreatmentData IdData TypeData Processing MethodData Processing Software And VersionData Normalization MethodData Normalization Software Name And VersionData Analytical Software And VersionReference Sequence SourceGenome Annotation Ref
1

GSM2871123-1

7020001000000000000000-715Sequence Read ArchiveSRP125954SRP125954_T1Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10755230-Nov-17Zhejiang UniversityHaide Chen, chenhyde628@gmail.comPublishedHan X, Chen H, Huang DMapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. 29622030Transcriptome7020001000000000000000-715GSM2871123-17020001000000000000000-715Embryonic stem cell (Inner cell mass)HumanPrimed H9Early embryonic tissueWiCell, Madison WIRNA-SeqHiSeq 2000IlluminaTotal RNASingle cell, cultured Fluidigm C1 chipSRR7093664SequenceSTAR v2.5.2a, featureCounts v1.5.1GRCh38
2

GSM2871123-2

7020001000000000000000-715Sequence Read ArchiveSRP125954SRP125954_T2Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10755330-Nov-17Zhejiang UniversityHaide Chen, chenhyde628@gmail.comPublishedHan X, Chen H, Huang DMapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. 29622030Transcriptome7020001000000000000000-715GSM2871123-27020001000000000000000-715Embryonic stem cell (Inner cell mass)HumanPrimed H9Early embryonic tissueWiCell, Madison WIRNA-SeqHiSeq 2000IlluminaTotal RNASingle cell, cultured Fluidigm C1 chipSRR7093663SequenceSTAR v2.5.2a, featureCounts v1.5.1GRCh38
3

GSM2871123-3

7020001000000000000000-715Sequence Read ArchiveSRP125954SRP125954_T3Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10755430-Nov-17Zhejiang UniversityHaide Chen, chenhyde628@gmail.comPublishedHan X, Chen H, Huang DMapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. 29622030Transcriptome7020001000000000000000-715GSM2871123-37020001000000000000000-715Embryonic stem cell (Inner cell mass)HumanPrimed H9Early embryonic tissueWiCell, Madison WIRNA-SeqHiSeq 2000IlluminaTotal RNASingle cell, cultured Fluidigm C1 chipSRR7093662SequenceSTAR v2.5.2a, featureCounts v1.5.1GRCh38
4

GSM2871128

7020001000000000000000-715Sequence Read ArchiveSRP125954SRP125954_T4Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10755530-Nov-17Zhejiang UniversityHaide Chen, chenhyde628@gmail.comPublishedHan X, Chen H, Huang DMapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. 29622030Transcriptome7020001000000000000000-715GSM28711287020001000000000000000-715Embryonic stem cell (Inner cell mass)HumanDay 10 reset H9Early embryonic tissueWiCell, Madison WIRNA-SeqHiSeq 2000IlluminaTotal RNASingle cell, cultured Fluidigm C1 chipSRR6335130SequenceSTAR v2.5.2a, featureCounts v1.5.1GRCh38
5

GSM2871129

7020001000000000000000-715Sequence Read ArchiveSRP125954SRP125954_T5Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10755630-Nov-17Zhejiang UniversityHaide Chen, chenhyde628@gmail.comPublishedHan X, Chen H, Huang DMapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. 29622030Transcriptome7020001000000000000000-715GSM28711297020001000000000000000-715Embryonic stem cell (Inner cell mass)HumanDay 20 reset H9 rep1Early embryonic tissueWiCell, Madison WIRNA-SeqHiSeq 2000IlluminaTotal RNASingle cell, cultured Fluidigm C1 chipSRR6335131SequenceSTAR v2.5.2a, featureCounts v1.5.1GRCh38
6

GSM2871130

7020001000000000000000-715Sequence Read ArchiveSRP125954SRP125954_T6Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10755730-Nov-17Zhejiang UniversityHaide Chen, chenhyde628@gmail.comPublishedHan X, Chen H, Huang DMapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. 29622030Transcriptome7020001000000000000000-715GSM28711307020001000000000000000-715Embryonic stem cell (Inner cell mass)HumanDay 20 reset H9 rep1Early embryonic tissueWiCell, Madison WIRNA-SeqHiSeq 2000IlluminaTotal RNASingle cell, cultured Fluidigm C1 chipSRR6335132SequenceSTAR v2.5.2a, featureCounts v1.5.1GRCh38
7

GSM3015986

7020001000000000000000-715Sequence Read ArchiveSRP125954SRP125954_T7Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10755830-Nov-17Zhejiang UniversityHaide Chen, chenhyde628@gmail.comPublishedHan X, Chen H, Huang DMapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. 29622030Transcriptome7020001000000000000000-715GSM30159867020001000000000000000-715Embryonic stem cell (Inner cell mass)HumanPrimed H1Early embryonic tissueWiCell, Madison WIRNA-SeqHiSeq 2000IlluminaTotal RNASingle cell, cultured Fluidigm C1 chipSRR6745454SequenceSTAR v2.5.2a, featureCounts v1.5.1GRCh38
8

GSM3015987

7020001000000000000000-715Sequence Read ArchiveSRP125954SRP125954_T8Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencinghttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10755930-Nov-17Zhejiang UniversityHaide Chen, chenhyde628@gmail.comPublishedHan X, Chen H, Huang DMapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. 29622030Transcriptome7020001000000000000000-715GSM30159877020001000000000000000-715Embryonic stem cell (Inner cell mass)HumanPrimed na_ve H1Early embryonic tissueWiCell, Madison WIRNA-SeqHiSeq 2000IlluminaTotal RNASingle cell, cultured Fluidigm C1 chipSRR6745455SequenceSTAR v2.5.2a, featureCounts v1.5.1GRCh38