SHOGoiN Cell Transcriptome: GSM1269004

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269004


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T40Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T0 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000102265 TIMP1 TIMP metallopeptidase inhibitor 1 102.1042
2 ENSG00000115414 FN1 fibronectin 1 100.6934
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 74.6866
4 ENSG00000231991 ANXA2P2 annexin A2 pseudogene 2 69.9373
5 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 56.4206
6 ENSG00000146197 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 49.0861
7 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 38.2579
8 ENSG00000075624 ACTB actin beta 36.8693
9 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 35.0523
10 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 32.8882

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277117 ICOS ligand -0.0912
57168 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.0912
57167 ENSG00000277109 NA -0.0912
57166 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.0912
57163 ENSG00000277103 NA -0.0912
10 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 32.8882
9 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 35.0523
8 ENSG00000075624 ACTB actin beta 36.8693
7 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 38.2579
6 ENSG00000146197 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 49.0861

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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