SHOGoiN Cell Transcriptome: GSM1269012

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269012


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T46Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T0 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 112.6879
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 95.4483
3 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 94.0380
4 ENSG00000011465 DCN decorin 81.5827
5 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 47.1792
6 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 34.9558
7 ENSG00000088448 ANKRD10 ankyrin repeat domain 10 31.8278
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 27.9189
9 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 25.9361
10 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 23.3144

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277089 NA -0.0866
57170 ENSG00000277087 NA -0.0866
57169 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.0866
57168 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.0866
57166 ENSG00000277081 NA -0.0866
57165 ENSG00000277077 NA -0.0866
57163 ENSG00000277073 MIR6131 microRNA 6131 -0.0866
57162 ENSG00000277066 NA -0.0866
10 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 23.3144
9 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 25.9361

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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