SHOGoiN Cell Transcriptome: GSM1269027

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269027


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T61Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T0 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 240.1469
2 ENSG00000169045 HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 27.0598
3 ENSG00000115414 FN1 fibronectin 1 10.8570
4 ENSG00000213639 PPP1CB protein phosphatase 1, catalytic subunit, beta isozyme 10.2983
5 ENSG00000137801 THBS1 thrombospondin 1 7.7898
6 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 6.9574
7 ENSG00000108821 COL1A1 collagen, type I, alpha 1 6.5127
8 ENSG00000079246 XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) 6.3303
9 ENSG00000116489 CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 6.0452
10 ENSG00000159140 SON SON DNA binding protein 5.9426

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
60675 ENSG00000283125 NA -0.0322
60674 ENSG00000283123 RARRES2P11 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 11 -0.0322
60673 ENSG00000283122 HYMAI hydatidiform mole associated and imprinted (non-protein coding) -0.0322
60672 ENSG00000283118 NA -0.0322
60671 ENSG00000283110 NA -0.0322
60670 ENSG00000283108 NA -0.0322
60669 ENSG00000283101 BMS1P21 BMS1 ribosome biogenesis factor pseudogene 21 -0.0322
60668 ENSG00000283098 NA -0.0322
60667 ENSG00000283097 NA -0.0322
60666 ENSG00000283096 NA -0.0322

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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