SHOGoiN Cell Transcriptome: GSM1269027

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269027


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T61Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T0 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 240.1469
2 ENSG00000169045 HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 27.0598
3 ENSG00000115414 FN1 fibronectin 1 10.8570
4 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 10.2983
5 ENSG00000137801 THBS1 thrombospondin 1 7.7898
6 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 6.9574
7 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 6.5127
8 ENSG00000079246 XRCC5 X-ray repair cross complementing 5 6.3303
9 ENSG00000116489 CAPZA1 capping actin protein of muscle Z-line subunit alpha 1 6.0452
10 ENSG00000159140 SON SON DNA binding protein 5.9426

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277182 NA -0.0322
57169 ENSG00000277174 NA -0.0322
57168 ENSG00000277173 NA -0.0322
57167 ENSG00000277172 GAPDHP41 glyceraldehyde 3 phosphate dehydrogenase pseudogene 41 -0.0322
57166 ENSG00000277171 NA -0.0322
57165 ENSG00000277170 NA -0.0322
57163 ENSG00000277168 NA -0.0322
57162 ENSG00000277162 NA -0.0322
10 ENSG00000159140 SON SON DNA binding protein 5.9426
9 ENSG00000116489 CAPZA1 capping actin protein of muscle Z-line subunit alpha 1 6.0452

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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