SHOGoiN Cell Transcriptome: GSM1269040

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269040


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T71Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T0 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 130.9268
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 111.0381
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 71.1068
4 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 49.5061
5 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 46.4147
6 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 43.1892
7 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 39.2442
8 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 35.2992
9 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 33.3391
10 ENSG00000115414 FN1 fibronectin 1 33.1357

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277047 NA -0.0866
57168 ENSG00000277043 EEF1A1P42 eukaryotic translation elongation factor 1 alpha 1 pseudogene 42 -0.0866
57167 ENSG00000277041 NA -0.0866
57166 ENSG00000277040 NA -0.0866
57165 ENSG00000277039 NA -0.0866
57164 ENSG00000277035 NA -0.0866
57163 ENSG00000277034 NA -0.0866
57162 ENSG00000277031 RN7SL796P RNA, 7SL, cytoplasmic 796, pseudogene -0.0866
10 ENSG00000115414 FN1 fibronectin 1 33.1357
9 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 33.3391

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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