SHOGoiN Cell Transcriptome: GSM1269044

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269044


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T74Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T0 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 110.7009
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 83.4984
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 61.8829
4 ENSG00000115414 FN1 fibronectin 1 59.9153
5 ENSG00000231991 ANXA2P2 annexin A2 pseudogene 2 49.0213
6 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 38.6804
7 ENSG00000105974 CAV1 caveolin 1 36.6840
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 33.9408
9 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 32.4255
10 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 32.2460

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277096 NA -0.1055
57169 ENSG00000277095 NA -0.1055
57167 ENSG00000277089 NA -0.1055
57166 ENSG00000277087 NA -0.1055
57165 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.1055
57164 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.1055
57162 ENSG00000277081 NA -0.1055
10 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 32.2460
9 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 32.4255
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 33.9408

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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