SHOGoiN Cell Transcriptome: GSM1269119

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269119


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T134Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T24 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 121.6776
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 118.4428
3 ENSG00000088448 ANKRD10 ankyrin repeat domain 10 86.3132
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 74.4161
5 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 49.1537
6 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 31.8149
7 ENSG00000115414 FN1 fibronectin 1 25.6674
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 22.8495
9 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 22.4090
10 ENSG00000138435 CHRNA1 cholinergic receptor nicotinic alpha 1 subunit 21.2818

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.0827
57170 ENSG00000277109 NA -0.0827
57169 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.0827
57166 ENSG00000277103 NA -0.0827
57163 ENSG00000277099 NA -0.0827
10 ENSG00000138435 CHRNA1 cholinergic receptor nicotinic alpha 1 subunit 21.2818
9 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 22.4090
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 22.8495
7 ENSG00000115414 FN1 fibronectin 1 25.6674
6 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 31.8149

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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