SHOGoiN Cell Transcriptome: GSM1269120

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269120


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T135Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T24 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 106.9370
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 92.2443
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 75.9855
4 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 72.1255
5 ENSG00000231991 ANXA2P2 annexin A2 pseudogene 2 58.3231
6 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 53.2739
7 ENSG00000115414 FN1 fibronectin 1 48.2377
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 28.8987
9 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 27.6770
10 ENSG00000138435 CHRNA1 cholinergic receptor nicotinic alpha 1 subunit 27.4756

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.0903
57170 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.0903
57168 ENSG00000277081 NA -0.0903
57167 ENSG00000277077 NA -0.0903
57166 ENSG00000277075 HIST1H2AE histone cluster 1 H2A family member e -0.0903
57164 ENSG00000277073 MIR6131 microRNA 6131 -0.0903
57163 ENSG00000277072 STAG3L2 stromal antigen 3-like 2 (pseudogene) -0.0903
57162 ENSG00000277066 NA -0.0903
10 ENSG00000138435 CHRNA1 cholinergic receptor nicotinic alpha 1 subunit 27.4756
9 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 27.6770

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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