SHOGoiN Cell Transcriptome: GSM1269153

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269153


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T161Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 101.3972
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 85.4017
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 85.3579
4 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 47.9147
5 ENSG00000091986 CCDC80 coiled-coil domain containing 80 47.5753
6 ENSG00000231991 ANXA2P2 annexin A2 pseudogene 2 38.1926
7 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 31.9630
8 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 29.2478
9 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 27.2662
10 ENSG00000226608 FTLP3 ferritin light chain pseudogene 3 26.4451

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277109 NA -0.1155
57170 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.1155
57167 ENSG00000277103 NA -0.1155
57164 ENSG00000277099 NA -0.1155
57162 ENSG00000277096 NA -0.1155
10 ENSG00000226608 FTLP3 ferritin light chain pseudogene 3 26.4451
9 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 27.2662
8 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 29.2478
7 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 31.9630
6 ENSG00000231991 ANXA2P2 annexin A2 pseudogene 2 38.1926

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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