SHOGoiN Cell Transcriptome: GSM1269157

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269157


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T165Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 171.2012
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 69.3872
3 ENSG00000167552 TUBA1A tubulin alpha 1a 59.0239
4 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 54.3572
5 ENSG00000159173 TNNI1 troponin I1, slow skeletal type 40.6082
6 ENSG00000133055 MYBPH myosin binding protein H 37.8353
7 ENSG00000155657 TTN titin 37.6997
8 ENSG00000124491 F13A1 coagulation factor XIII A chain 36.9864
9 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 33.7262
10 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 23.7548

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277144 NA -0.0762
57169 ENSG00000277143 NA -0.0762
57168 ENSG00000277142 LINC00235 long intergenic non-protein coding RNA 235 -0.0762
57167 ENSG00000277141 NA -0.0762
57166 ENSG00000277138 MIR6509 microRNA 6509 -0.0762
57164 ENSG00000277136 NA -0.0762
57163 ENSG00000277135 NA -0.0762
57162 ENSG00000277130 NA -0.0762
10 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 23.7548
9 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 33.7262

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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