SHOGoiN Cell Transcriptome: GSM1269175

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269175


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T181Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 126.8263
2 ENSG00000137801 THBS1 thrombospondin 1 109.3538
3 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 68.2964
4 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 59.1927
5 ENSG00000115414 FN1 fibronectin 1 50.0175
6 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 49.8810
7 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 42.2859
8 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 37.6561
9 ENSG00000088448 ANKRD10 ankyrin repeat domain 10 26.6992
10 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 26.4131

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277089 NA -0.0851
57169 ENSG00000277087 NA -0.0851
57168 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.0851
57167 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.0851
57165 ENSG00000277081 NA -0.0851
57164 ENSG00000277077 NA -0.0851
57163 ENSG00000277075 HIST1H2AE histone cluster 1 H2A family member e -0.0851
10 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 26.4131
9 ENSG00000088448 ANKRD10 ankyrin repeat domain 10 26.6992
8 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 37.6561

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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