SHOGoiN Cell Transcriptome: GSM1269178

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269178


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T184Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000115414 FN1 fibronectin 1 101.3197
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 92.1581
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 74.5417
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 61.6481
5 ENSG00000133110 POSTN periostin 54.9106
6 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 54.4747
7 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 47.6051
8 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 42.0434
9 ENSG00000120708 TGFBI transforming growth factor beta induced 40.9007
10 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 36.6072

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277089 NA -0.0920
57169 ENSG00000277087 NA -0.0920
57168 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.0920
57167 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.0920
57165 ENSG00000277081 NA -0.0920
57164 ENSG00000277077 NA -0.0920
57163 ENSG00000277075 HIST1H2AE histone cluster 1 H2A family member e -0.0920
10 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 36.6072
9 ENSG00000120708 TGFBI transforming growth factor beta induced 40.9007
8 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 42.0434

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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