SHOGoiN Cell Transcriptome: GSM1269179

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269179


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T185Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 181.7274
2 ENSG00000167552 TUBA1A tubulin alpha 1a 70.4288
3 ENSG00000155657 TTN titin 57.6478
4 ENSG00000143632 ACTA1 actin, alpha 1, skeletal muscle 41.0605
5 ENSG00000159173 TNNI1 troponin I1, slow skeletal type 34.7780
6 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 25.4204
7 ENSG00000133055 MYBPH myosin binding protein H 23.6338
8 ENSG00000103994 ZNF106 zinc finger protein 106 22.2756
9 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 21.6140
10 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 21.0776

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57169 ENSG00000277120 MIR6089 microRNA 6089 -0.0788
57168 ENSG00000277119 NA -0.0788
57167 ENSG00000277118 NA -0.0788
57164 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.0788
57163 ENSG00000277109 NA -0.0788
57162 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.0788
10 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 21.0776
9 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 21.6140
8 ENSG00000103994 ZNF106 zinc finger protein 106 22.2756
7 ENSG00000133055 MYBPH myosin binding protein H 23.6338

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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