SHOGoiN Cell Transcriptome: GSM1269185

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269185


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T191Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 93.0796
2 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 78.7124
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 76.0489
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 73.4473
5 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 51.7074
6 ENSG00000167552 TUBA1A tubulin alpha 1a 42.3506
7 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 40.3356
8 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 38.6604
9 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 33.6886
10 ENSG00000112308 C6orf62 chromosome 6 open reading frame 62 27.3349

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57169 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.1101
57168 ENSG00000277109 NA -0.1101
57167 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.1101
57164 ENSG00000277103 NA -0.1101
10 ENSG00000112308 C6orf62 chromosome 6 open reading frame 62 27.3349
9 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 33.6886
8 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 38.6604
7 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 40.3356
6 ENSG00000167552 TUBA1A tubulin alpha 1a 42.3506
5 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 51.7074

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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