SHOGoiN Cell Transcriptome: GSM1269189

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269189


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T194Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 99.2015
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 83.3981
3 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 68.6397
4 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 58.8738
5 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 39.6314
6 ENSG00000088448 ANKRD10 ankyrin repeat domain 10 38.0355
7 ENSG00000115414 FN1 fibronectin 1 35.4510
8 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 32.8242
9 ENSG00000091986 CCDC80 coiled-coil domain containing 80 30.3385
10 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 28.1707

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277120 MIR6089 microRNA 6089 -0.1103
57170 ENSG00000277119 NA -0.1103
57169 ENSG00000277118 NA -0.1103
57168 ENSG00000277117 ICOS ligand -0.1103
57165 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.1103
57164 ENSG00000277109 NA -0.1103
57163 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.1103
10 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 28.1707
9 ENSG00000091986 CCDC80 coiled-coil domain containing 80 30.3385
8 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 32.8242

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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