SHOGoiN Cell Transcriptome: GSM1269201

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269201


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T206Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 85.1905
2 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 82.7119
3 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 79.8911
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 75.7847
5 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 41.7225
6 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 39.2902
7 ENSG00000112308 C6orf62 chromosome 6 open reading frame 62 32.2151
8 ENSG00000115414 FN1 fibronectin 1 30.9388
9 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 30.5411
10 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 27.5723

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.1084
57168 ENSG00000277103 NA -0.1084
57165 ENSG00000277099 NA -0.1084
57163 ENSG00000277096 NA -0.1084
57162 ENSG00000277095 NA -0.1084
10 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 27.5723
9 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 30.5411
8 ENSG00000115414 FN1 fibronectin 1 30.9388
7 ENSG00000112308 C6orf62 chromosome 6 open reading frame 62 32.2151
6 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 39.2902

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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