SHOGoiN Cell Transcriptome: GSM1269210

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269210


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T215Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 108.5827
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 93.4514
3 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 74.0186
4 ENSG00000137801 THBS1 thrombospondin 1 50.6060
5 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 46.3127
6 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 43.1690
7 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 40.5962
8 ENSG00000075624 ACTB actin beta 31.2376
9 ENSG00000255248 MIR100HG mir-100-let-7a-2-mir-125b-1 cluster host gene 30.1763
10 ENSG00000103994 ZNF106 zinc finger protein 106 26.9925

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277095 NA -0.1105
57169 ENSG00000277089 NA -0.1105
57168 ENSG00000277087 NA -0.1105
57167 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.1105
57166 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.1105
57164 ENSG00000277081 NA -0.1105
57163 ENSG00000277077 NA -0.1105
57162 ENSG00000277075 HIST1H2AE histone cluster 1 H2A family member e -0.1105
10 ENSG00000103994 ZNF106 zinc finger protein 106 26.9925
9 ENSG00000255248 MIR100HG mir-100-let-7a-2-mir-125b-1 cluster host gene 30.1763

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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