SHOGoiN Cell Transcriptome: GSM1269214

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269214


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T219Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 141.1659
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 133.3731
3 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 55.1966
4 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 52.0828
5 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 43.2390
6 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 40.9502
7 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 37.9314
8 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 35.1974
9 ENSG00000100234 TIMP3 TIMP metallopeptidase inhibitor 3 32.8955
10 ENSG00000107796 ACTA2 actin, alpha 2, smooth muscle, aorta 30.1648

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.0534
57169 ENSG00000277109 NA -0.0534
57168 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.0534
57165 ENSG00000277103 NA -0.0534
57162 ENSG00000277099 NA -0.0534
10 ENSG00000107796 ACTA2 actin, alpha 2, smooth muscle, aorta 30.1648
9 ENSG00000100234 TIMP3 TIMP metallopeptidase inhibitor 3 32.8955
8 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 35.1974
7 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 37.9314
6 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 40.9502

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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