SHOGoiN Cell Transcriptome: GSM1269216

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269216


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T220Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 104.8716
2 ENSG00000115414 FN1 fibronectin 1 85.0737
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 67.5640
4 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 67.0194
5 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 58.3253
6 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 50.4774
7 ENSG00000075624 ACTB actin beta 46.6182
8 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 41.6736
9 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 40.6628
10 ENSG00000137801 THBS1 thrombospondin 1 34.4683

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277128 NA -0.0966
57170 ENSG00000277127 NA -0.0966
57169 ENSG00000277125 NA -0.0966
57168 ENSG00000277124 NA -0.0966
57164 ENSG00000277120 MIR6089 microRNA 6089 -0.0966
57163 ENSG00000277119 NA -0.0966
57162 ENSG00000277118 NA -0.0966
10 ENSG00000137801 THBS1 thrombospondin 1 34.4683
9 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 40.6628
8 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 41.6736

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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