SHOGoiN Cell Transcriptome: GSM1269226

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269226


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T228Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 101.7098
2 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 85.8084
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 79.5526
4 ENSG00000115414 FN1 fibronectin 1 62.9664
5 ENSG00000231991 ANXA2P2 annexin A2 pseudogene 2 46.3295
6 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 39.4736
7 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 32.9304
8 ENSG00000075624 ACTB actin beta 31.2734
9 ENSG00000091986 CCDC80 coiled-coil domain containing 80 30.3097
10 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 28.9909

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57169 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.1068
57168 ENSG00000277109 NA -0.1068
57167 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.1068
57164 ENSG00000277103 NA -0.1068
10 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 28.9909
9 ENSG00000091986 CCDC80 coiled-coil domain containing 80 30.3097
8 ENSG00000075624 ACTB actin beta 31.2734
7 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 32.9304
6 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 39.4736
5 ENSG00000231991 ANXA2P2 annexin A2 pseudogene 2 46.3295

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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