SHOGoiN Cell Transcriptome: GSM1269232

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269232


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T231Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 109.8072
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 84.2296
3 ENSG00000115414 FN1 fibronectin 1 77.6814
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 73.4709
5 ENSG00000133110 POSTN periostin 43.7785
6 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 41.3451
7 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 39.1305
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 38.1736
9 ENSG00000120708 TGFBI transforming growth factor beta induced 30.7368
10 ENSG00000112308 C6orf62 chromosome 6 open reading frame 62 25.3916

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277058 HNRNPCL3 heterogeneous nuclear ribonucleoprotein C-like 3 -0.1176
57170 ENSG00000277057 MIR6779 microRNA 6779 -0.1176
57169 ENSG00000277056 NA -0.1176
57167 ENSG00000277052 MIR6763 microRNA 6763 -0.1176
57166 ENSG00000277051 NA -0.1176
57165 ENSG00000277050 NA -0.1176
57164 ENSG00000277049 RNA5SP530 RNA, 5S ribosomal pseudogene 530 -0.1176
57162 ENSG00000277047 NA -0.1176
10 ENSG00000112308 C6orf62 chromosome 6 open reading frame 62 25.3916
9 ENSG00000120708 TGFBI transforming growth factor beta induced 30.7368

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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