SHOGoiN Cell Transcriptome: GSM1269234

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269234


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T233Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 102.4665
2 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 91.7842
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 72.2747
4 ENSG00000137801 THBS1 thrombospondin 1 51.6398
5 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 36.8516
6 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 36.5615
7 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 34.5745
8 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 31.4533
9 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 29.4048
10 ENSG00000167601 AXL AXL receptor tyrosine kinase 28.7630

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277087 NA -0.1188
57170 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.1188
57169 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.1188
57167 ENSG00000277081 NA -0.1188
57166 ENSG00000277077 NA -0.1188
57165 ENSG00000277075 HIST1H2AE histone cluster 1 H2A family member e -0.1188
57163 ENSG00000277073 MIR6131 microRNA 6131 -0.1188
57162 ENSG00000277072 STAG3L2 stromal antigen 3-like 2 (pseudogene) -0.1188
10 ENSG00000167601 AXL AXL receptor tyrosine kinase 28.7630
9 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 29.4048

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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