SHOGoiN Cell Transcriptome: GSM1269242

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269242


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T240Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 121.2364
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 96.6685
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 73.8591
4 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 62.6641
5 ENSG00000088448 ANKRD10 ankyrin repeat domain 10 56.1998
6 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 43.8096
7 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 39.9923
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 33.1714
9 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 22.9776
10 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 21.6384

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57169 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.1009
57168 ENSG00000277109 NA -0.1009
57167 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.1009
57164 ENSG00000277103 NA -0.1009
10 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 21.6384
9 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 22.9776
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 33.1714
7 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 39.9923
6 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 43.8096
5 ENSG00000088448 ANKRD10 ankyrin repeat domain 10 56.1998

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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