SHOGoiN Cell Transcriptome: GSM1269273

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269273


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T269Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T72 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 136.0488
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 104.0131
3 ENSG00000115414 FN1 fibronectin 1 69.2937
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 67.8117
5 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 56.3160
6 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 38.1552
7 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 33.8293
8 ENSG00000075624 ACTB actin beta 26.8437
9 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 23.1587
10 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 22.4938

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277058 HNRNPCL3 heterogeneous nuclear ribonucleoprotein C-like 3 -0.0890
57169 ENSG00000277057 MIR6779 microRNA 6779 -0.0890
57168 ENSG00000277056 NA -0.0890
57166 ENSG00000277052 MIR6763 microRNA 6763 -0.0890
57165 ENSG00000277051 NA -0.0890
57164 ENSG00000277050 NA -0.0890
57163 ENSG00000277049 RNA5SP530 RNA, 5S ribosomal pseudogene 530 -0.0890
57162 ENSG00000277047 NA -0.0890
10 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 22.4938
9 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 23.1587

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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